Syngnathus scovelli (Gulf pipefish): 125985107
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Entry
125985107 CDS
T08785
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4 isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125985107
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sscv02000
]
125985107
Transporters [BR:
sscv02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
125985107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
125985107
NCBI-ProteinID:
XP_049603565
LinkDB
All DBs
Position
17:8436641..8456021
Genome browser
AA seq
2323 aa
AA seq
DB search
MKTGSQIRLLLWKNWTLRKRQKIRFLVELLWPVLLFVGLVWLRKANPLYQQHECHFPNKA
MPSAGVLPWIQGIFCNANNPCFRHPTRGESPGVVSNYNNSILSRFYTDILEMFSDTEVHQ
LRRMWHEVSAFSDFMDTLRTNPAAVSGRGLKIEDILKDDELLTAFLLRDAELPQSVVYQL
TNAEIRIEQFASGIPDLQLKDIACSQALLERFIIFPSRHGLHSVRNAMCALSQQRLQKIE
DALYANVDFFKIFQLLPRIMDAASEGVDLRQWGRVLRASSERIRELMQRNNSRALIKAVT
SLFGDGGPASFSELTASMSSLFCGYPEGGGARVLSFNWYEDNNYKVFLGVNNSRARDTYV
YDYTTTGFCNSLMETLESNPVTKAVWNSVKPLLMGKILYTPDSPAVRKILKSANTTFEEL
ERLRNIAKMWEEVGPQLWAFFHNSVQMNVIRDTLANPTVMNFMDTSLEDANVTTRDILNF
LYSGSEEWRQAGMSGFDWRNIFNVTDQIMHTINRYAECITLDKFVAYTDESQMIHQALYL
LEENKFWAGVVFADIYPWTTSLPPHVKYKIRMDIDAVERTNKVKDRYWDPGPRADPVEDQ
RYIWGGFAYLQDMIEHGIIKVHTGHDWPLGVYVQQMPYPCYVDDLFMITLNRCFPMFMVL
AWIYSVSMTVKSIVLEKELRLKETLKAMGVANGVLWCTWFIDSFVTMAASTMLLTSIIVG
GKVLNYSNPVLVYLFLLTFTVATIMQCFLMSVFFNKANLAAACSGVLYFTLYLPHVLCYA
WQDRLTVNMKMAASLLSQVAFGFGTEYLSRYEEQGMGLQWDNIQTSPLEKDNYSFLTSIF
MMALDAILYGILAWYLDNVFPGQYGIGRPFYFPLQPSYWHKSSSAAAAADDLDTSQEADN
AEKDPESGGTPADTGNTCNGSASRKTCKHQSKRERLEKEKEWLRLQEEQEEKEEEENASG
RQEGLLLFEPDPLGLELGVCIQELVKVFPGGSRPAVDRLSLNFYEGQITSFLGHNGAGKT
TTLSILTGLFPPTSGSAYIYGRDIRTDMDAVRSSLGMCPQYNILFNHLTVEEHILFYSLL
KGRTHAEAQKEVEDMLVDLGLPHKREDEAQNLSGGMQRKLSVAMAFVGGSKVVILDEPTS
GVDPYSRRSIWDLLLKYRSGRTVILSTHHMDEADLLSDRIAIISKGQLHCCGSPLFLKNC
FGAGFYLTLVRRIKDLKKKENDCDCASDCSCTCSICTRHKDQSQNLCQTAERVLEGNLDS
ISGLIHHHVPDAKLIEAIGQELTFLLPSRCFKHRAYASLFRELEETLTDMGLSSFGISDT
SLEEIFLKVTADGEALASNPTTAEDWMLRRRKKEAGVDEERYDAMQANSVTLQAASDCSA
GKGSRQVKGAWLILKQFHALLVKRFHHATRSRKDFVAQIVLPASFILIALIFTTIVPPFG
EYPSLTLSPWMYGPQVFFVSNEKPMDPTMRHFVERFLKQPGLGTRCMQGEPLGLPCNHEP
SEWQRPDVDAVTSNILQSPEWNQRNPSPSCLCSSGRKLTMMPICPAGAGGLPPVQRLEAT
GDTLMDLTERNISDFLVKTYPSVIRTSLKSKYWVNEQRYGGLSIGGQLPILDVEPRDIEN
VFRQLGRMLNITAGPHSIVAMRELGPFLRYMESEFNVKVWYNNKGWHAMVAFMNVANNAI
LRAFLPTSAKPIEFGITALNHPLNLTKEQLSEVTVLTTSVNAVVAICVIFAMSFIPASFV
LYLIQERASQAKHLQFVSGVSPFIYWLSNFFWDMVNYSISAAMVVVIFVAFDKKCYTSPA
NLPALVALLLLYGWSVTPMMYPMSYLFNIPSTAYVSLSCINLFIGINSSAVTFILELFEN
NRSLLMFNKWLKKGLLVFPHFCLGRGLIDMAMNQAVTDVYARFGEEHTDNPFRWDFIGRN
VCFMAAEGFIFFAFNLLIQYRFFLDHWLSDRKRSPAADEDDDVACERRRIYDGGSKSDIL
HIQDLTKTYVGSKRVAVDGICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVSSGDATV
VGYSILKEILDVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPEDEIPRVAEWGIQKL
GLSEYAGRCAGTYSGGNKRKLSTAIAMIGCPALVLLDEPTTGMDPHSRRFLWNAILSVIR
DGRAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGDGYVLTMKMKAAKAGA
PPDLEPVEEFMESSFPACVRREKHYNTLQYHIASSSLARIFQLVVSNKERLGIQDYSVSQ
TTLDQVFVNFAKQQTAEDDVVTLQRRGVGTRKDVKIAPVKRKT
NT seq
6972 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgggctctcaaattcgcctgttgctttggaagaactggacccttcgcaaaagg
cagaagattcgcttcctggtcgaactcttgtggcccgttttgctgttcgttggtttggtg
tggctgaggaaagccaacccgctctaccagcagcatgaatgtcatttccccaacaaggcc
atgccgtctgcgggcgtgcttccttggatccagggcatcttctgcaatgccaacaacccc
tgcttcagacaccccaccagaggagagtctccaggggtcgtctccaactataacaattca
atattgtcacgcttctacacagacatcttggagatgtttagcgacacggaggtgcaccag
ctgagacgtatgtggcatgaggtgtctgccttctccgacttcatggacacgttacgcacc
aatccagctgctgtgtcaggtcgcggtctcaagatcgaggacatcctgaaggacgatgag
cttctgacggcgttcttgctgcgagatgccgagctcccccagtctgttgtctaccagttg
accaatgcggaaatccgaatagaacagtttgcatcaggcatcccggacctgcagttgaag
gacatcgcgtgcagccaggcactactagagcgcttcatcatcttcccaagccgccacggc
ctccacagcgtccgcaatgccatgtgcgctctcagccaacagcggctgcagaagatcgag
gatgcgctgtacgccaacgtggacttcttcaagatcttccaactgttgcctcgcattatg
gacgccgcttccgagggggtggacctgcggcagtggggtcgcgtcctcagggcgtcgtca
gagaggattcgagagctgatgcagcgcaacaactcccgggcactcattaaagcagtgact
tcgctcttcggcgatgggggccctgcctctttctcagagctgacggcgtccatgtccagc
cttttctgcggctacccggagggcggtggcgcacgtgtactttccttcaactggtacgag
gacaacaactacaaggtgttcctgggtgtcaacaacagccgtgcccgtgacacctacgtc
tatgactacactaccactggcttctgcaacagcctgatggagacgctggagtctaacccg
gtcaccaaagcggtgtggaattctgtcaagcccctgctgatgggaaagatcctctacact
cctgactcccctgccgtccggaagatattaaaaagcgcgaacaccaccttcgaggagctg
gagaggctgcgcaacattgccaagatgtgggaagaggtgggacctcagctgtgggctttc
ttccacaacagcgtgcagatgaatgtgatcagagacacactggcaaaccccacggtgatg
aactttatggacacgagcctggaggatgccaacgtgaccaccagagatatcctcaacttc
ctgtacagtggctcagaagaatggcgacaggcaggaatgtccggctttgactggaggaac
atttttaacgtcactgaccaaatcatgcacaccatcaacagatatgctgagtgcatcact
ctggacaagtttgtggcctacacggacgagtcgcagatgatccaccaggccttgtacctg
ctggaggaaaacaagttctgggccggcgtggtcttcgccgacatatacccctggaccacc
agtctcccaccacatgtcaagtataagatccggatggacattgacgccgtggagcgcaca
aacaaggtcaaagacaggtactgggatccaggccctcgggcggaccctgtggaggaccag
agatacatctggggtggctttgcctacttgcaagacatgatcgaacatggcatcattaaa
gtgcacacgggccacgattggccactaggggtctatgtgcagcagatgccctacccttgc
tacgtggatgacctcttcatgatcacgctgaaccgctgcttcccgatgttcatggtgctg
gcgtggatctactcagtttccatgacagtgaagagcattgtattggagaaggagctgcgc
ctcaaggagaccctcaaggccatgggcgtggctaacggtgtcctttggtgcacctggttc
atcgatagctttgtcaccatggcagccagcacgatgctgctcacctccatcattgtgggc
ggcaaggtgttgaactacagcaacccggtgctggtgtacctcttcctgctgacgttcacc
gtggccaccatcatgcagtgcttcctcatgagcgtctttttcaacaaggccaacctggca
gcagcgtgcagcggtgtgctttacttcaccctctacctgccgcacgtgctttgctacgcc
tggcaggaccgcctcaccgtcaacatgaagatggccgccagcctgctgtctcaggtggcg
tttgggtttgggacagaatacctgtcacgctacgaggagcagggcatgggcctgcagtgg
gacaacatccagaccagcccgctagagaaggacaactactccttccttacctccatcttt
atgatggcgctggatgccatactctacggcatcctggcctggtacctggacaacgtcttt
ccaggtcagtatggcattggtcggccattctacttccccctgcagccttcctattggcac
aaatcttcatctgcagctgctgccgcagatgacttagacacgtcacaagaagcggacaat
gcagaaaaggaccctgaaagtggcggcacacctgcagacactggcaacacctgtaacggc
tcagccagcaggaaaacctgcaagcaccaaagcaaacgggagcgcctggagaaggagaaa
gagtggctgaggctacaggaggagcaagaggagaaggaggaggaggaaaacgcctccgga
aggcaagagggcctgcttttgtttgagccggatccattgggtctggagttgggggtttgc
atccaggagctggtcaaggtgttcccaggaggctctcgccccgctgtcgaccgcctcagc
ctcaatttctacgagggtcagatcacctccttcctgggacacaatggggccggcaagact
accaccttatccatccttactgggctcttcccgccaacgtccggttctgcttacatctac
ggaagagacatccgcaccgacatggacgccgtgcggtcctctttggggatgtgtcctcaa
tacaacatccttttcaatcacctgacagttgaagagcacatcctgttctactcgctgctg
aagggtcgcacgcacgccgaggcgcagaaggaggtcgaggacatgctggtggacctgggc
ctacctcacaagcgagaagacgaagcccagaacctctcaggtggcatgcagaggaagctg
tcggtcgccatggcatttgttggcggctccaaggtggtcatcctggacgagcccacttcc
ggcgtggatccttattccaggaggtctatatgggacctcctgttgaaatacagatccggt
cgcacggtgatcctgtccacgcaccacatggacgaagccgacctactgagcgaccgcatc
gccatcatctccaagggccagctgcactgctgcggctcaccgctcttcctcaagaactgc
tttggtgccggcttctacctgaccctggttcggcgcataaaggacctcaagaagaaagag
aacgactgtgactgtgcctccgactgttcctgcacctgctccatttgcaccagacacaag
gatcagtcccaaaacctgtgccagacagccgaacgggtactcgaggggaacctggacagc
atcagcggcctgatccaccaccacgtccccgatgctaagctcatcgaagccatcggtcaa
gagctgaccttcctgctgcccagtcggtgcttcaagcaccgcgcctacgccagcctcttc
agggagctggaggagaccctcaccgacatgggcctcagcagctttggcatctccgacaca
tccctggaggagatcttcctaaaggtgacagcagatggcgaggcattagcgagcaatccc
accaccgctgaagactggatgttacggagaaggaaaaaagaagcgggagtagatgaagag
cgctacgatgccatgcaagctaacagcgttacgctgcaggccgcgtcagactgcagcgct
ggcaaaggctcaaggcaggtgaaaggagcctggctgatcctgaagcagtttcacgcgcta
ctcgtcaagagatttcatcacgccactcgaagccgcaaagactttgtggcgcagattgtc
ctacctgccagcttcatcctcatagcgctcatcttcaccaccatcgttccaccctttgga
gagtaccccagcctgaccttgagcccctggatgtacggaccgcaagtcttcttcgtcagt
aatgagaaacccatggacccgaccatgaggcactttgtagaacgcttcttaaagcaacca
ggtcttggaacccgatgcatgcaaggggaaccactggggctgccttgcaaccacgagccg
tccgagtggcaacgtcccgacgtggatgccgtgacgagcaacatcctgcagagtccggag
tggaaccagaggaacccatcaccctcctgcctgtgcagcagcggcagaaagctaaccatg
atgcccatctgccccgctggtgccggaggcctcccgcccgtgcaacgcttggaagccacg
ggggacaccttgatggatctgacagagcgcaacatctcggacttcttagtcaaaacttac
ccaagtgtcatcagaacaagtttgaagagcaaatactgggtcaatgaacaaagatatggt
ggcctgtccatcggaggacagcttcctatcctggatgtggagcccagagacattgaaaac
gttttccgtcaacttgggcgaatgctcaacatcacggcgggtccacattccatagtggca
atgcgggagctcggacctttcctacgatatatggagagtgaatttaacgtaaaggtgtgg
tacaacaacaaaggctggcatgccatggtggccttcatgaatgtagccaacaacgccatc
ctgcgggcattcttgcccactagtgccaagcccatcgagttcggcatcaccgccctcaac
cacccactaaacctcaccaaggagcagctttccgaggtcactgtactgaccacatcagtg
aacgcggtggtggccatctgcgtaatcttcgccatgtccttcatcccggccagttttgtc
ctctacctcatccaggagcgtgctagccaagccaagcacctgcagtttgtcagcggcgtt
agcccttttatctactggctgtccaacttcttctgggacatggtgaactactccatcagc
gctgccatggtggtcgtcatcttcgtggcatttgacaaaaagtgctacacgtccccagcc
aacctgcctgcccttgtagctctgctcctgctctacgggtggtccgtgacgcccatgatg
taccccatgtcgtacctgttcaacatcccgagcactgcctacgtgtcgctgtcctgcatc
aacctgttcatcggcatcaacagcagcgctgtcactttcatcctggagctcttcgaaaac
aaccggtcgctgctgatgttcaacaagtggctgaagaaaggcctgctggtttttcctcac
ttctgtctgggtcgcggccttatcgacatggccatgaaccaggcagtcactgacgtctac
gcccgtttcggtgaggagcacacagacaaccccttccgatgggactttattgggcggaac
gtttgcttcatggcggcggaaggttttatcttctttgctttcaacctcctcatccagtac
cgcttcttcttggaccactggttatcagacaggaagcgtagcccggcggcagacgaggac
gacgacgtggcatgcgagcgacgaagaatctacgacggcggcagcaagtcggacatcctg
cacatccaagacctcaccaagacttatgtgggcagcaaaagggtggctgttgatgggatc
tgtgtgggtgttcccgccggtgagtgtttcggacttttaggcgttaacggcgccggcaag
acgaccaccttcaaaatgttgacaggcgacactgacgtcagctccggggatgctactgtg
gttggttacagcatcctgaaagaaattctggacgtgcaccagaatatgggatactgtccg
cagttcgatgccattgacgagttgctgacgggcagggagcacctgtacctgtacgcccgc
ctcaggggggtgcctgaggatgagatccccagggtggcagagtggggcatccagaagttg
ggcttgtcggagtacgccggccgctgcgccggcacctacagcggtggcaacaaacgcaaa
ctgtccaccgccatcgccatgatcggttgcccggcgttagttcttttggatgagcccacc
acagggatggacccgcattcccgccgtttcctgtggaacgccattttgagtgtcatccgt
gacgggcgggctgtcgtgctgacgtcgcacagcatggaggagtgcgaggctctgtgcacg
cgactcgccatcatggtcaacggcaccttcaagtgtctgggtaccatccagcacctcaaa
tacaaattcggggacggctacgtgctgaccatgaagatgaaggcggcaaaagcgggagcc
cctcctgacctggagcccgtggaggaattcatggagagcagcttcccggcgtgcgtgcgg
cgcgagaaacattacaacacgctacagtaccacatcgcctcatcctcgctggccaggatc
ttccagctggtcgtctccaacaaggagcgactcggcattcaggactattccgtctcgcag
accacgttagaccaggtgtttgtcaacttcgccaagcagcagacggcggaggacgacgta
gtcactctgcagcgacgcggtgtgggcacacgcaaggatgtcaaaatcgcgccagtgaaa
aggaaaacctga
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integrated database retrieval system
