Syngnathus scovelli (Gulf pipefish): 125985120
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Entry
125985120 CDS
T08785
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125985120 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125985120 (smg7)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125985120 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
125985120 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
125985120
NCBI-ProteinID:
XP_049603632
LinkDB
All DBs
Position
17:complement(9144162..9153344)
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AA seq
1123 aa
AA seq
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MSLCAHFVRQAEALKADMTDSKLAAAEAWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCSVFNVDLPCRV
KSSRLGILGGGPNGSSIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV
PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESREESRG
KWSVSDFVRAFIKFHGHVYMSKGLEQLDALRQRLEEQFQRLILQKAFTSQQLVHVTVINL
FALHHLRETAADGQQTVSWFQLLGLFMSFLGLMCSRVLLNKNHGSGKEEEEEVAGECPLP
AIKVSLDWLRLKPGVFHEPAVDQRQHIWPWLVSILNSFQPKDQHVSTSSVTPLPEEFELQ
GFLALRPALRSVDFSKGHQGVPVDRDVLLLRTRHQRLVVLGKWIADNQPGLIQCRASEDG
LLLFLSDIPEQAIQEPAQEEPCVLQEASNGEGGIAGLKSVLSVGKAGNAWADGAERPVVT
FKENIKPREQSREPARLPHQRDVGKERRDSAKGNGLAPSPSVVKSEPKRDGKRKCETKKP
AQEKVPEAGKQVKAQTELRKTPVTQPQAATCAASQFIPIHHPGAFPPLPSRPGFPPSTFV
IPSPPVAFPGLQVNPGFAFSAGVSVPGAFLQAQAGSQAAGGGGKPSHIPYSQQRPSGPGA
SVLGQQQPQMPHSQLQVSSPGKPVQPFAMAKSPPHLQQAFVQDAQLWSPSQAALQKLPPS
VQMSLKSQNFYLTPQDTVKVYEHQVAPPPAADKQMKFPPYWDAASFRPPDDRTRRPPEQD
MVTRGGGPFEGTSRSPLLPPDLLNSLAADVDDRDQPLFSKSPDLSRALSAPLSSLAGPNM
FLPNHSRQTDGGLRAPGQSSSLLSAAQEYNQNSIFSQAYGKKMAASSKCDTPSLQQETSL
YSLFEWTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPSTHNHAAAQAAFSNFGPIGAP
DSRERRAPDRWKADKTGGTSSLGLDYLPAATSDAGWHQAPPGGSSWANQESPMEESSSSV
LLDSFKSIWSSSMMQSGPSALEQLLLQQKQKQQREYGAMNPPH
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcctctgcgcacactttgtccgacaggcagaggccctcaaggcggacatgacagac
tccaagctggcggcggctgaggcgtggacgtcccgccaggccctgcaggacttgtaccag
aagatgctggtcacagacctggagtacgctttggacaagaaggtggagcaggacctgtgg
aaccacgcctttaagaaccagatcaccaccttgcagagccaggccaagaaccgtgccaac
cctaaccgcagcgaggtccaggccaacctgtccttgttcctggaggcggccagcggcttc
tatactcagctgttgcaggagctttgcagcgtcttcaacgttgacctaccgtgtcgcgtc
aagtcttcgcggctgggtatcctcggcggcggacccaacggcagtagcattgtgacacca
cagcccagctcctgctcgtacatctgccagcactgcctggtgcacctgggcgacatcgca
cgctaccgcaaccagaccagccaggccgagtcctactaccggcacgccgcccagctggtc
ccgtccaacggtcagccgtacaaccagctggccatcctggcatcttccaaaggagaccac
ctcaccaccatcttctactactgccgcagcatcgctgtcaagtttccctttcccgccgcc
tccactaacctgcagaaggcgctgtccaaggctctggagagccgcgaggagtccagaggc
aagtggagtgtgtccgacttcgtcagggccttcatcaagttccatgggcacgtgtacatg
agcaagggattggagcagctggacgctttgaggcaacgtctggaggagcaatttcagagg
ctgatcctgcagaaggccttcacttcgcagcaactggtccacgtgacagtcatcaacctg
tttgcgctgcatcacctgcgagaaacggcagctgacggccagcagacggtcagctggttc
cagctcctcggccttttcatgtccttcctgggcctcatgtgcagccgggttctgctcaac
aagaaccatggcagtggcaaagaagaagaggaggaggtggcgggagagtgtcctctgcca
gccatcaaagtttccctcgattggctccgcctgaagcccggcgtgttccatgagcccgct
gtggaccagaggcagcacatctggccctggctggtctccatcctcaacagctttcagccc
aaagaccagcacgtgtccacatcttcagtgacgccactgccggaggagtttgagcttcaa
ggcttcctggctctgcggccggctctcaggtcagtggacttcagcaaaggtcaccagggc
gttccggtggaccgcgatgtgcttctgctgcgcacgcgccaccagagactggtcgtgctg
ggaaagtggatcgccgacaaccagccggggctcatccaatgtcgcgccagtgaggatggc
ctgctgctctttctcagcgacattcccgagcaggccatccaagagccggcgcaagaggag
ccgtgcgtgctgcaggaggcgtccaacggtgagggcggcatcgccggcctcaagtcagtg
ctgtcggtgggaaaagccggcaacgcgtgggcggacggcgccgagcgccctgtggtcact
ttcaaagaaaacatcaagccgcgcgagcagagccgggagcccgctcggctgccccatcag
agggacgttgggaaggagcgccgcgactcggccaaaggaaacgggctggcaccctctccc
tcggtggtcaaaagcgaacccaagcgagacggcaagaggaagtgcgagaccaagaaacct
gcacaggagaaagttccagaagctggaaaacaggtgaaagctcaaacagagctgaggaag
actccagtcactcaaccgcaagcagcaacgtgcgccgcttcccagttcatccccatccat
caccccggagccttcccgcctctgcccagtcgccccggctttccgccgtccaccttcgtc
atcccttctcccccggtggcgttcccgggcctgcaggtgaacccgggctttgccttctcg
gcgggtgtgtcggtgccaggcgccttcctgcaggcccaggcgggctcacaggcggccggc
ggcggcggcaagccgtcgcacatcccgtacagtcagcagagaccatccgggcctggcgcc
tcggtgctcggccagcagcagccgcagatgccccactcgcagctgcaggtgtcgtcgccc
ggcaaacccgtccagccgttcgccatggccaagagcccgccccacctgcagcaggcgttt
gtgcaggatgcgcagctgtggagtcccagccaggcggcgctgcagaagcttccgccatcc
gttcagatgtcgctgaagtcacaaaacttctacctgacacctcaagacaccgtcaaagtg
tacgaacaccaggtagcaccaccgcccgccgccgacaagcagatgaagttcccgccctac
tgggacgccgcctccttccggccgcccgatgacaggacgaggcggcccccggagcaggac
atggtgaccagaggaggggggccctttgaggggacctcgcgttcgcctcttctccctcct
gacctgttgaactctctggctgccgatgtggacgaccgggaccagccgctcttttctaag
tctcccgatttgtcccgggctctgtccgctcctcttagctcgcttgccggacccaacatg
tttctgcccaatcacagcaggcagacagacggcggcctccgagcgcccggccaatcgtct
tccctcttgtccgccgcgcaggagtacaaccagaacagcatcttcagtcaagcctacggg
aagaagatggcagcgagctccaagtgcgacactccctcactgcagcaggagacgtcgctc
tactcgctgtttgagtggacgccatggtcaccctcactgcccgccagctcagatcactcc
accccggccagccaatcccctcactcgtccaaccccagcagcctgccgtcctccccgtcc
acccacaaccacgcggcggcccaggcggccttctccaatttcgggcccatcggtgcgcca
gacagtcgtgagcgcagagcgccggaccgctggaaggccgacaagacaggcggcaccagc
agcttggggttggactacctgccggccgccacctcggatgccggctggcaccaagcccca
cccggcggtagctcttgggccaatcaagagtctcccatggaagagtcgtcctccagcgtt
ctgctggacagcttcaagtcaatctggtccagctcgatgatgcagtcgggcccgtcggca
ctggagcagcttcttctgcagcaaaagcagaaacaacagcgagaatacggcgccatgaac
ccgccgcactga
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