Syngnathus scovelli (Gulf pipefish): 125985122
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Entry
125985122 CDS
T08785
Name
(RefSeq) zinc finger E-box-binding homeobox 1 isoform X1
KO
K09299
zinc finger homeobox protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125985122
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
125985122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
zf-Di19
zf-C2H2_jaz
Homeodomain
zf-C2H2_6
zf-C2H2_15
VIT
Motif
Other DBs
NCBI-GeneID:
125985122
NCBI-ProteinID:
XP_049603639
LinkDB
All DBs
Position
17:9403786..9417156
Genome browser
AA seq
1067 aa
AA seq
DB search
MADGPRCKRRKQANPKRSSVTNLNGGLEASSSDSDDDDKLHIVEDEIPPDTAVARRDRRH
AKEATDATDAVLAHNGAWNGVKEDQRVSGEEGEDGRGGDGKVEGQVVVKEEEEEEEQEII
RKGDTAALYPEAADDEQSPTETGGADENAGTPDTFQLHTCPYCSRGYKRNASLKEHIKYR
HETSEDNYRCSHCSYTFTYRSQLERHMSHHRGNKEQRHVQPSGGGGGGSGGGARKFKCTE
CFKAFKYKHHLKEHLRIHSGEKPYECSNCKKRFSHSGSYSSHISSKKCVSVASAPNGLAR
KAVRSPAPIVDVPRVESKPLQEQLPVTQIKSEASEHPGKPAVVAAAPAANGAAPQALSQG
VAMVIPTVGLVPPININLSELQNVLKVAMDGNVLRQVLGPPNGATVQGKPGIVLQQPQQQ
IISLPAFVDHDGTTKIIINYRIGPAPAATAATSSVPAHPVPVFVKNNIAPAPPVPTRTAD
KPPTPKVDLSLVKDEPEESVLITETKTEQAVSVKTEEGEAAPPDCGSSACSLCDECPEHL
EALHLLQHHKAANGEAVDSAALDPSFAALLSDAGVTLQQEPAENDLLSLLKTYFASNANP
DRAELEKISDSVRIPVGVVQKWFAKRNSGTKSCRDGTAQRLNSESVDGGKLAVSGSRSDS
PSLNTSDLVIVKSEPEDPEVTESQAEPLDLSLPKSLTAATCTTAPSEGASPATLNLTCLR
KEQVGGRTVYLATPQTHTTAVSIVPSTQLPTLVAIAGQGTVGCLGAMGGSAKRTILIPQL
TYTYANTAGGAAETVVLNGHKTPEQSADAVADEQREISLMKKPRLENGVYSCDLCNKVFQ
KGSSLLRHKYEHTGKRPHECPVCKKAFKHKHHLIEHSRLHSGEKPYQCNKCGKRFSHSGS
YSQHMNHRYSYCKRDGSDSGLSPDGDSAATVAGSPDVALDSDVGESEDDDDEAVCVDDIR
VVQVDDGECEIYEGDFNDSDNDGEVEEGPEEKEKNLDVDEFACQVVEVELKHDQTQEAPV
EDKADQAEAAGVHLEQMADCAYKRIRDWSDSEESSDDQAATPQPPTL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaaacgcagaaaacaggccaacccgaaacggagcagcgtg
acaaacttgaacggcggcttggaggccagcagctctgattcggacgatgatgacaagctc
cacatcgtggaggatgaaatcccgccagataccgccgtggcgaggagggaccgccgccat
gccaaagaagcaacagacgccaccgacgcagtattagcacacaacggcgcttggaatgga
gtgaaagaggatcagcgtgtgtccggagaagaaggtgaagatggacgaggaggggacgga
aaggtggaggggcaggttgtcgtgaaggaagaagaggaagaagaggagcaggagatcatc
cggaaaggagacacggccgccctctacccggaagccgctgacgatgagcagagtcccacg
gaaacggggggcgccgatgaaaacgcaggcacgccggacacgtttcagctgcacacgtgt
ccgtattgctcgcggggttacaagcgcaacgcttcgctgaaggagcacatcaagtaccgg
cacgagaccagtgaagacaactacagatgctcgcactgcagctacaccttcacgtaccgc
tcgcaactcgagaggcacatgagccaccaccggggcaacaaagagcagcgtcacgtgcag
ccgtccggcggcggtggcggtggaagtggaggaggtgctcgcaagttcaagtgcacagag
tgcttcaaggccttcaagtacaagcaccacctgaaggagcacctgcgcattcacagcggc
gagaaaccatacgagtgctccaactgcaagaagcgattctcccactcaggctcatacagc
tcgcacatcagtagcaagaagtgcgtgagtgtggccagcgcccccaacggcctggcccgc
aaggccgtcaggtcgccggcgcccatcgtcgacgtcccacgggtggaaagcaaacccttg
caagagcagctccccgtcacgcaaatcaaatcggaggcgagcgagcaccccggcaagcca
gccgtggtggcggcggcaccggccgccaacggggcggcgccccaagccctatctcaaggc
gtggctatggtgatccccaccgtgggtctggtgccgcccatcaacatcaacctgagtgag
ctgcagaacgtcctgaaggtggctatggatggcaacgttttgaggcaggttttgggaccc
cccaacggggccacggtgcagggcaagccgggtatcgtgctacagcaacctcagcagcag
atcatcagcctgcccgccttcgtggaccacgacggcaccaccaaaatcatcatcaactat
cgcattggacccgcgccggccgccaccgccgccacttccagcgtccccgcccaccccgtg
ccggtttttgtcaaaaacaacattgccccggctccacccgtcccgaccagaacggcggat
aagccgcccactcccaaggtggacctcagcctggttaaggatgagcctgaagagtctgta
ctcatcacggaaacaaaaacagagcaagcggtgagcgtcaagacggaagagggggaggcg
gctccgcccgactgcggctctagcgcttgttcactttgcgacgagtgtcccgagcacctg
gaggcactgcacctgctccagcaccacaaggcagccaacggggaggcggtggactcagcc
gcgttggacccgtccttcgccgccttgctcagcgacgccggggtgacgctgcagcaggag
ccggccgagaacgatctcctgagcctcctgaagacctactttgcctccaacgccaaccct
gaccgggcagagctggagaagatctcggactcggttcgtattcccgtgggcgtggtgcag
aaatggtttgccaagaggaactctgggacaaagagctgccgagacgggacggctcagcgt
ctaaactctgagtcggtagacggcggcaagctagccgtatctggatcccggtccgattcc
ccctcgttgaacaccagcgacttggtcatcgtcaaaagtgagccggaggacccggaggtc
acagagtcccaggcagaacctctggacctgtccctcccaaagtccctcactgccgccact
tgcaccaccgcgccttccgagggtgcgtcccccgccactctgaatctgacctgcctgagg
aaggagcaggtgggcggtcgcaccgtctacctggccacgcctcaaacgcacacaactgcc
gtcagcatcgtgcccagcacgcagctgcccaccctagtggctatcgccggtcagggcaca
gtggggtgccttggcgccatggggggctccgccaagcggaccatcctcatcccgcagctc
acctacacctacgccaacacggccggaggcgcggccgagacggtcgtgctcaacgggcac
aagacgcccgaacagagcgctgacgctgtggcggatgagcagagggagatatcactcatg
aagaagccgcgtctggaaaacggcgtctattcctgtgacctgtgcaacaaggtcttccaa
aaggggagctccttgctcaggcacaaatacgaacacacaggaaagcgtcctcacgagtgc
ccggtgtgcaagaaggccttcaagcacaagcaccacctgatcgagcactcgcgcctccac
tcgggcgagaaaccttaccagtgcaacaagtgcggcaagcgcttctcgcactccggttcc
tactctcagcacatgaaccaccgctactcctactgcaagcgggacggctccgattctggc
ctcagcccggacggcgatagcgcggccacggtggcgggcagtcctgacgtcgcgctggac
tcggacgtcggcgagagcgaggacgacgacgacgaagccgtgtgtgtcgacgacatccgg
gtggtgcaggtggacgacggcgagtgcgaaatctacgagggcgactttaacgacagcgac
aacgacggggaagtggaagaaggacctgaagagaaagagaaaaacctcgacgtggatgag
tttgcgtgccaggtggtggaggtggagctgaagcacgaccagacgcaggaggcgcccgtc
gaggacaaggcggaccaggcggaggcggccggcgtccacctggaacagatggccgactgc
gcgtacaaaagaatcagggactggtcggacagcgaggaatcctccgacgaccaagctgcg
accccccaaccccccacgctttga
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