Syngnathus scovelli (Gulf pipefish): 125985130
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Entry
125985130 CDS
T08785
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03030
DNA replication
sscv03410
Base excision repair
sscv03420
Nucleotide excision repair
sscv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125985130 (lig1)
03410 Base excision repair
125985130 (lig1)
03420 Nucleotide excision repair
125985130 (lig1)
03430 Mismatch repair
125985130 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sscv03032
]
125985130 (lig1)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125985130 (lig1)
Enzymes [BR:
sscv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125985130 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
125985130 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
125985130 (lig1)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
125985130 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
125985130 (lig1)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
125985130 (lig1)
NER (nucleotide excision repair)
Other NER factors
125985130 (lig1)
MMR (mismatch excision repair)
Other MMR factors
125985130 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
MCM3_WHD
Motif
Other DBs
NCBI-GeneID:
125985130
NCBI-ProteinID:
XP_049603673
LinkDB
All DBs
Position
17:complement(9614558..9630589)
Genome browser
AA seq
935 aa
AA seq
DB search
MQRSIASFFQPKAKDKDVQKKARNEQVKKPVKSPLKAQNAVLQDDSPVKRVAKRSRRILD
SDDDDDDDDDDKEEVNTAKQVKDHLFKAVPTTMSPPPPPPAPATPTTPATPATSTSPSTP
NSTSSSGGTNMRKTARKMFPKRKLDDSDSLKEDEAASVKTDAVVESQQNKRARVDGDDGD
NKDEVAEEERDEEAAVEQVRTPDKDEEMAEEVDKKLNGEEQKKDEVTKEGAEKAPVSSFF
APRKAAAKTPNKSAEKKEVTTATVVISSPEKDGKDAKSESTETDYDPSRANYHPLEHACW
KEGQKVPYLAVARTFEKIEEDSGRLRNIETLANLFRSVLLLSPDDLLCCVYLCLNQLGPA
YLGMELGIGETVLMKAVAQATGRQLDKIKAEAQERGDLGLVAESSRSNQRTMFRPASLTA
GGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLS
ALSQAVCLTTPQKGTSPAVMDVGKGMTKESRRAWIEEKSLILKQTYCEMPNYDILLPVLL
REGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHVLES
GEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDAEAVAWDQEKKQIQPFQVLTTR
KRKDVDAADIKVQVCVYAFDLLYLNGESLVRQPLRRRRELLRESFDQAEGEFVFARFIDS
DNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCV
IGAYLGKGKRTGTYGGFLLACYDQDNEEFQSVCKIGTGFKDEDLEQHHKFLKEHILDKPR
PYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDPEKGISLRFPRFLRVRDD
KKPEDATSGAQIADLYNKQQQIQNQGDKGDLEEYY
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagtatcgcatcttttttccagcccaaggcaaaggacaaggatgttcagaag
aaagccagaaacgagcaagtgaaaaagcctgtcaaaagcccactcaaggcccaaaacgcg
gtcctccaggatgactcgccggtcaagagggttgccaaacgcagccggcgaattctggac
agcgatgatgatgatgatgatgatgatgatgataaagaagaggtgaacactgccaaacaa
gtcaaagaccatctcttcaaggcagtgccaacaaccatgtctcctccgccacctccgccg
gcccccgccacgcccaccacgcctgccacgcccgccacctccacatccccgagcacaccc
aactccacctcgtcttctggaggcacgaacatgcgcaagacggccaggaagatgttcccc
aagaggaaactggatgacagcgacagtctaaaggaggacgaggccgccagcgtaaagact
gacgctgtcgtggagagccagcagaacaaacgagctcgcgtggacggagacgacggtgac
aacaaagatgaggtcgccgaggaagaaagagatgaggaggcggcggtggagcaggtgagg
acgccggacaaagacgaagagatggcagaggaggtggacaaaaagctcaatggagaagag
cagaagaaagacgaggtcacaaaagagggagctgagaaagcaccagtcagcagcttcttt
gctcccagaaaggctgcggccaagaccccgaacaagagtgcagagaagaaggaggtgaca
acggcgaccgtggtgatttcctccccggagaaagacggcaaagacgccaaaagcgagtcg
acagaaacagactacgacccgtccagggccaactaccacccgttggagcacgcctgctgg
aaggagggacaaaaagtgccttacctggcggtggctcgcacctttgagaaaatcgaggag
gactctggcagactgaggaacatcgagactctggccaacctgttccgctcggtgcttctg
ctgtctccagatgacttgctgtgctgcgtgtacttgtgtctgaaccagttgggccccgcc
tacctcggcatggagctcggcatcggggagacggtgctgatgaaagctgttgcgcaagcc
acaggacgacaacttgacaagatcaaagcggaggcccaggagcgcggcgacctgggtctg
gtggccgagagctcccgaagtaaccagcgcaccatgttcaggccggccagcctgacggcc
ggcggcgtcttcaagaagctcaaggagattgcaagcatgagcggcaactcggccatgaat
aagaagatcgacattatcaaaggactctttgtggcctgccgcttctcagaggcccgctac
atcgtcaggtcgctcgccggcaagctgcggatcggactggccgagcagagcgtcctgtct
gcgctgagtcaagccgtgtgcctcaccacaccccagaaaggcacgtccccagccgtgatg
gacgtcggcaaagggatgaccaaggagagcaggcgggcttggatcgaagagaagtctctc
attctcaagcagacttactgcgagatgcccaactacgacatccttctccccgtcctcctt
cgagaaggcatcgaccagcttcccaatcactgcaagctcaccccgggcgtacccctgagg
cccatgctggcacaccccactaagggagtcggggaggtgatgaaacgcttcgacgaggcc
gcgttcacctgcgagtacaaatacgacggcgagcgtgcacagattcacgtcctggagagt
ggcgaggttcgcatcttcagccgcaaccaggaagacaacaccagcaagtaccctgacatc
atctctcgtatccccaaagtgaagaaagactcggtggtctcctgcgtgctggacgcagag
gcggtggcctgggaccaggagaagaaacagatccagccattccaggtcctcaccacacgc
aagaggaaggacgtggatgccgccgacatcaaagtccaagtgtgcgtgtacgcctttgat
ctgctctacctgaatggagagtccctggtacgacagccgctgcgtcgccgtcgggagcta
ctgcgagagtccttcgaccaagccgagggcgagtttgtattcgcccgattcatcgactcg
gacaacacggacaccatcgccgagttcctggagcagtctgtccgagactcgtgcgaaggc
ctgatggtgaagactctggagaaggacgctacctatgaaatcgccaagcgctcccataac
tggctcaagttgaagaaggactacctggagggcgtcggcgacacggtggacctgtgcgtc
atcggcgcctacctgggcaaaggcaagcggacgggcacgtacggcggcttcctgctggcc
tgctacgaccaagacaacgaggagttccagtctgtctgcaagattgggaccggcttcaag
gacgaagatctggagcagcaccacaagttcttgaaggaacacatcctcgacaagccccgc
ccctactaccgcgtggaccaatcggccgagccagatgtgtggctggacgcggtgcaggtc
tgggaggtgaagtgtgccgacctgtcgctctcgcccgtctacaaggctgccatgggaatg
gtggatccagagaagggaatctccctgcgtttccctcgcttccttcgcgtgcgagatgac
aagaagcccgaagacgccaccagcggagctcagatcgccgacctgtacaacaagcagcag
cagatccagaatcagggagacaaaggcgacttggaggaatactattga
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