Syngnathus scovelli (Gulf pipefish): 125985260
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Entry
125985260 CDS
T08785
Symbol
cldn1
Name
(RefSeq) claudin-1
KO
K06087
claudin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03272
Virion - Hepatitis viruses
sscv04382
Cornified envelope formation
sscv04514
Cell adhesion molecules
sscv04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
125985260 (cldn1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125985260 (cldn1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
125985260 (cldn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125985260 (cldn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sscv03037
]
125985260 (cldn1)
04147 Exosome [BR:
sscv04147
]
125985260 (cldn1)
04515 Cell adhesion molecules [BR:
sscv04515
]
125985260 (cldn1)
Cilium and associated proteins [BR:
sscv03037
]
Other cilia and associated proteins
Stereociliary proteins
125985260 (cldn1)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of ovarian cancer cells
125985260 (cldn1)
Exosomal proteins of colorectal cancer cells
125985260 (cldn1)
Cell adhesion molecules [BR:
sscv04515
]
Immunoglobulin superfamily
L1 family
125985260 (cldn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PMP22_Claudin
Claudin_2
OppC_N
DUF6535
DUF898
TMEM37
DUF6479
DUF1218
Motif
Other DBs
NCBI-GeneID:
125985260
NCBI-ProteinID:
XP_049603891
LinkDB
All DBs
Position
17:8955869..8957851
Genome browser
AA seq
211 aa
AA seq
DB search
MANSGIQLLGFSLAFLGFIGAIASTIMVEWKASSYAGDNIVTAQALYEGLWKSCAAQSTG
QVQCKVYDSLLQLPGIVLGTRGLMLASIFICLIALLVAMMGMKCTTCLADQPEQKNKVAL
SSGIILIIAGLLALVGTSWYGHRIAQEFYNPFTPTNSRYEFGSALYVGWGAASLIMIGGG
FLCCNCSKNDSGKGSGYPRTNPASNSGKDYV
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggccaattctggaatacaacttcttggcttctcactagcctttctgggcttcattggc
gccatcgcatccaccatcatggtggaatggaaggcttcatcgtacgctggagacaacatt
gttacagctcaggcactttatgaaggcctttggaagtcatgtgcagcacagagcacgggc
caagttcagtgcaaagtgtatgattcacttctccaactaccaggcattgttttgggcaca
cgaggactgatgttggcatccatctttatctgcttgattgccctcttggtggcaatgatg
ggcatgaagtgcaccacatgtttggcagaccagccggagcagaaaaacaaagtggcttta
agtagcggaatcatcctgattatagcgggtctgcttgctctggtgggaacatcttggtac
ggccacagaatagcccaggaattttacaacccgttcacaccgaccaattccaggtatgaa
tttggaagtgccctgtatgtgggatggggagctgcaagcctcatcatgatcgggggaggc
ttcctgtgctgcaactgctccaaaaacgactcgggcaaaggttcaggctatccacgaaca
aacccggccagcaactcgggcaaagactacgtgtag
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