Syngnathus scovelli (Gulf pipefish): 125985292
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Entry
125985292 CDS
T08785
Symbol
cacna1eb
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010
MAPK signaling pathway
sscv04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125985292 (cacna1eb)
04020 Calcium signaling pathway
125985292 (cacna1eb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125985292 (cacna1eb)
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
125985292 (cacna1eb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
DUF2755
Motif
Other DBs
NCBI-GeneID:
125985292
NCBI-ProteinID:
XP_049603921
LinkDB
All DBs
Position
17:6187710..6213460
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AA seq
2314 aa
AA seq
DB search
MFTSSNQSLSVSLTPTLRSPSTCGPGGQQRVHSSLSLPEPEPWRKHLPAGRPGLAQGVRS
CSLQVPHGEFPELPARAASFDLPRDGADDSDRGSGSPSPHGVLRRRGGLVEQRDIIMAHQ
AHKIQSTPQARRKEWEMARFGDESAPSTVDSGDGDAERGGDALEPGAAAAGGGSADASAA
MTASMKQAKAQRARTMALYNPVPHRQNCLTVNRSLFIFAEDNIIRKYARRIIEWPPFEYM
ILATITANCVVLALEQHLPGEDKTPMAKRLEKTEPYFIGIFCFEAGIKLVALGFVFHKGS
YLRNGWNVMDFIVVLSGILATAGAHMNIPVDLRTLRAVRVLRPLKLVSGIPSLQIVLKSI
MKAMIPLLQIGLLLFFAILMFAIIGLEFYSGKLHHTCLPTVDILDNETVDSSELAFACGV
RKCPERYDCNDTWIGPNDGITQFDNILFAVLTVFQCITMEGWTAVLYNTNDALGTTWNWM
YFIPLIIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQVERELNGYRAWIDR
AEEVMLAEENKNSGRSALDVLKRASKKTGARRGAPGDDKYTDMSTASMSRSRMNFRSGRR
GPAAYLRRKERMLRISIRRMVKTDTFYLMVLSLVALNTICVAIVHHNQPDWLTIFLYYAE
FVFLGLFLAEMFLKMYGLGFRLYFHSSFNCFDCGVIVGSIFEVVYGFFRPGMSFGISVLR
ALRLLRIFKITKYWASLRNLVVSLMSSMKSIISLLFLLFLFVVVFALLGMQLFGGRFIFE
DYTPTNFDTFPAAIMTVFQILTGEDWNEVMYNGIRSQGGVQYGMWSSIYFIVLTLFGNYT
LLNVFLAIAVDNLANAQELTKDEEEEEEFFNQRYARGRDGLISDGRRRPYLYRKRAIHRG
RPTFPDDPDGSMGAADEPPRNSSNAFANRRERRRKVNMSVWEQRANQLRKRRQLASKEEL
FSSPAEETVETPSTHHVPALSAEASPAHLPESPVSVGMPLPEPPMSITIPIPEPPAAEPL
VNLSEEKTGGANHRTTGGGRHRMARKFRPGPEEGARHRRHRHREARPEAKSLDCTQTPHD
ALLVKRSLSQERRILDEREENEEKAKAEGQAQEDSGTCIVNPYADVGEDGRMSDIPEPPQ
CPTIPVEMALEATEYSTCTLESEKRAGSIHRDKSNAEGSVAIEMSAQPLLELTPMTVNSK
ELEAYHSEQTDRDEETEDEEPPITPKAVAPGSMFLFKASNPIRRICHYIVNIRYFEMSIL
LVIVASSIALAAEDPVCASSERNKVLRYFDYVFTGVFTFEMVIKMINQGLILHDGSYFRD
MWNILDFIVVVGALIAFALTNNKGRDIKTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVT
SLKNVFNILIVYQLFMFIFAVIAVQLFKGKFFYCTDSSMNTEKECQGYYIDYTRDKKEVK
RREWKRHEFHYDNVCWALLTLFTVSTGEGWPQVLQHSTDVTEESMGPSRGNRMEMSVFYV
VYFVVFPFFFVNIFVALIIITFQEQGDKMIQECSLEKNERACIDFAISAKPMTRYMPQNR
QTFQYKLWHFVASPSFEYTVLVMIALNTVVLMMKYHSAPTAYDTVLKHFNTAFTVLFSLE
CILKIMAFGFVNYFRDTWNIFDFITVLGSITEIVVDLQSMNSINMSFLKLFRTARLIKLL
RQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIKLNDESHINQHNNFK
TFFGALMLLFRSATGESWQEIMLSCLSGQECEPDPSIAPFTLSPDHEGGCGTDFAYCYFV
SFIFFSSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRIWGEYDRLACGRIHYTAM
YEMLTHMSPPLGLGKKCPAKIAYKRLVLMNMPVDEDMSVHFTSTLMSLIRTALDIKIARG
GEDRIALDAELQKEISIIWPYLPQKTLDLLVPINKDTDMTVGKIYASMMIMDYFKQNKAK
KLRQQLEAQKSNLIFKRLDASTLPEDILSNTQPLPMMAHSAGSALTRGGFVALSPISPQE
LFLQSMNSDTDAGQQQNPTEAAGGSLKRSASTVSDQQVNGLWQEEKSPERFYRPRHKSYK
AAVSRSERGRSKERCHLLSPNASRCNSEERSLQPSRSSSVERTRPRDKQGNSSDSPVPST
SESSTPSVRRPSSQTPTRSRPHITYSPLVCRADPSVGEHDGTEATRREQETVGGEREGDK
AGRHPSPLRRYPSEPFLASQEEDHSPDPTGPMETLTFEAAVACSLGRSNTVSSARPRLRT
GWQIPNGHFRKRLAQTASVAGCDTLSDTEEDDRC
NT seq
6945 nt
NT seq
+upstream
nt +downstream
nt
atgttcaccagttccaatcagtccctgtccgtctccctcacgcccaccctccgttcgccg
tccacatgcggtccaggcggacagcagcgcgtgcactcctccctgtcccttccggaaccc
gagccctggcggaagcacctcccggccggccggcccggcctggcgcagggcgtccgttcc
tgctccttgcaggtgccgcacggcgagttccccgagctccccgcccgggcggccagcttc
gacctgcctcgcgacggagcggatgattccgatcgaggttcgggctccccgagcccgcac
ggcgttcttcggcgccgcggtggcctcgtggagcagagggacatcatcatggctcaccag
gctcacaagatacagagcacaccgcaagctcgcagaaaggagtgggaaatggctcgcttc
ggtgacgagtccgccccgagcacagtggactccggggatggagacgcggagcgcggcggg
gacgcgctggagcccggggctgcggcggccggaggaggaagtgccgacgcatcggccgcg
atgacggcgtccatgaagcaagccaaggcgcagcgggcccggaccatggctctatacaac
ccggtaccgcaccggcagaactgcctgactgtcaacaggtctctgttcatcttcgcggag
gacaacattatcaggaagtacgcgcggcgaatcatcgagtggccgccgttcgagtacatg
atcctggctaccataaccgccaactgtgtggtgctggctctggagcagcacctgcccgga
gaggacaagacccccatggcaaagagactggagaaaaccgagccgtacttcattgggatc
ttctgcttcgaggcgggcatcaagctggtagcgctgggctttgttttccataaaggttct
tacctgaggaacggttggaatgttatggacttcatcgtggtgctcagtgggatcttggca
acggcgggagcgcacatgaacatccccgtggaccttcgcactctgagggctgtgcgagtc
ttgagacccctcaagctcgtctccggcatccccagtctgcagattgtgctcaagtccatc
atgaaggccatgatccctctgctgcagatcggcctgctcctcttcttcgccatcctcatg
tttgccatcatcggcctggagttctacagcgggaagcttcaccacacctgcctgccaact
gtcgacattctcgacaacgaaacagtggactcatccgaattggcttttgcgtgcggcgtg
aggaagtgcccggagagatacgactgtaacgacacgtggatcggccctaatgacggcatc
acgcagtttgacaacatcctgtttgccgtcctcaccgtcttccagtgcatcaccatggag
ggatggacggctgttctctacaatacgaatgatgccttgggcacaacatggaactggatg
tacttcatcccactcatcatcattggctccttctttgtgctcaacctcgtgctgggagtc
ctttccggagagtttgccaaggagagggagcgggtggagaacaggcgggctttcatgaag
cttcggaggcagcagcaggtggaacgtgaactcaacggctaccgcgcctggatagacagg
gcagaggaggtcatgctggcagaggagaacaagaattcggggaggtcggcattagatgtg
ctgaagagggcaagtaagaagacgggcgcacgtcgaggagccccaggcgatgacaagtac
acggacatgtccactgccagtatgtctcgctccaggatgaacttccgcagcggtcggcgc
ggtccggccgcttacctgcgtcgcaaagaacgcatgttgcgcatctccatccgccgcatg
gtgaagacggacacgttctacctgatggtgcttagcctggtggctctcaacaccatctgc
gtggccatcgtgcaccacaaccaacccgactggctcaccatcttcctctactatgcagag
tttgtgttccttgggctgttccttgctgagatgttcttgaagatgtacggtttgggtttc
cgtctttacttccattcgtctttcaactgcttcgactgtggcgtaattgtcggtagcata
ttcgaggtcgtttacggcttcttccggcccggtatgtcgtttggcatcagcgtgctgaga
gcgctgagacttctgaggattttcaagattaccaaatactgggcctctctcaggaacctg
gttgtgtcgctcatgagctccatgaagtccatcatcagcctgcttttcctgctcttcctc
tttgttgtggtgtttgccctgctggggatgcaactttttggaggacggttcatctttgag
gattacactcccaccaactttgacacgtttccagctgcgatcatgacagtgtttcagata
ttgacgggcgaagactggaatgaagtgatgtataacgggattcgctcgcaaggaggcgtg
cagtacggcatgtggtcgtccatctattttatagtgctcacccttttcggaaactacaca
ctcctcaatgtctttttggccatcgctgtggataatctggccaatgcacaggaactgaca
aaggatgaagaggaggaggaagagttctttaaccaacggtatgccagaggcagggatggc
ttaatatcggatggaagaagaagaccctacctctacaggaaacgcgccatccaccgaggt
cgacctaccttccccgatgatccagacggctcgatgggagccgcggatgagccgccccgg
aacagctccaacgccttcgccaaccgccgcgagaggcggagaaaagtcaacatgtccgtc
tgggagcagagggccaatcagttgcgcaagcgccgccaactagctagcaaggaggagctc
ttcagcagccctgccgaggagacggtcgaaactccctcgacccatcatgtacccgcgctg
tccgcagaagccagcccggcacacctccccgagtcccccgtgtccgtggggatgccttta
cccgaaccgcccatgtccataaccatccccatacccgagccccctgcagccgagcctttg
gtcaacctctccgaggagaaaacaggcggcgctaaccaccgaacgacaggcgggggtcgg
cacaggatggctcgcaagttcagaccggggccggaggaaggggccagacaccgacgccac
cgtcaccgagaggctcgccccgaggccaagagcttggactgcacgcaaacgccacacgat
gcgctgctggtcaagcgctcactcagtcaagagaggaggatcctggatgagcgggaggag
aatgaagagaaagctaaggcagaaggccaggcccaggaagactctggaacgtgtatcgtc
aacccgtatgcagacgttggagaagatggaaggatgtctgacatccccgaacctcctcag
tgtccaaccatcccggtggagatggctttggaggccacggagtactcgacgtgtaccctt
gaaagcgagaaacgcgcaggctccatccaccgcgacaaatccaatgcagaaggatccgtg
gccattgaaatgtccgcacaacctctgctggaattgactcccatgacagtgaacagtaaa
gagctggaagcctaccattctgaacagacagacagagatgaagaaaccgaggatgaggaa
cctcctattactcccaaagctgttgctccgggcagcatgttcctcttcaaggcttcaaac
ccgatcagaaggatctgccattacattgttaatatacgctactttgagatgagcatcctt
ctggtgattgtggccagcagcatcgcactggccgccgaggatcccgtctgcgctagttcg
gaaaggaacaaggtcctacgatattttgattatgtcttcaccggggtgttcacctttgaa
atggtcatcaagatgatcaaccagggcctcatcctgcacgacggctcctatttccgagac
atgtggaacatcctggatttcatcgtggtggtgggagcgctcattgccttcgctctgaca
aacaacaaaggtcgagacatcaagaccatcaagtcccttcgcgttctgagagtcctgcgg
ccactcaagaccatcaagaggcttcctaaactcaaagccgtgtttgactgtgtggtgaca
tccctgaaaaacgtcttcaatatcctcattgtgtaccagctctttatgttcatctttgcc
gtcatcgccgtgcagcttttcaagggcaagttcttctactgcaccgacagctccatgaac
acggaaaaagagtgccaaggctattacatcgactacaccagggacaagaaggaggtgaag
aggagagagtggaagagacacgagttccattacgacaacgtctgctgggccctcctcact
ctcttcaccgtctccaccggcgaaggatggcctcaggtgctgcagcactccaccgatgtg
accgaggagagcatggggccgagtcgagggaaccgaatggagatgtccgttttctacgtg
gtgtactttgtggtttttcccttcttcttcgtcaatatcttcgtggctttgatcatcatc
actttccaagagcagggcgacaagatgattcaggagtgtagcctggagaagaatgagagg
gcgtgcattgattttgccatcagtgccaagcccatgacacgctacatgccccagaacagg
caaaccttccagtacaagttgtggcactttgtggcgtcgccttctttcgagtacaccgtg
ctggtgatgatcgccctcaacacggtagtcctcatgatgaagtatcactcagcccccacg
gcatatgacactgttctgaagcacttcaacacagcgttcactgtcctcttctccctggag
tgcatcctcaagattatggcgtttggttttgtgaattatttccgagatacctggaatatt
tttgacttcatcacagtgctcggcagcatcactgagatcgttgtggatctacagtccatg
aacagcatcaacatgagcttcctgaagctcttccgaacagcccgcttgatcaaattgctg
aggcagggttacaccattcgtattctgctctggacctttgtccagtcttttaaggcactt
ccttacgtgtgcctgctcatcgccatgctttttttcatatacgccatcattggaatgcag
gtttttggaaatatcaagttaaatgatgagagccacatcaaccagcacaacaacttcaag
acttttttcggcgctctcatgctgcttttcaggagtgcaacgggggagtcttggcaggag
atcatgctttcgtgtctgtcgggccaggagtgcgagcccgacccctccatcgcccccttc
accttgtcgccggaccatgagggaggctgcggcacagactttgcttactgttactttgtc
tccttcatcttcttcagctcctttctgatgttaaatctctttgtggctgtcattatggat
aactttgagtacttgacgcgagactcctccatcctcggaccgcatcacctggatgagttt
gtccgaatctggggagaatacgatcgtctggcatgtggacgcattcactacacagccatg
tatgagatgttaacacacatgtctcctccactgggcctaggcaaaaaatgtcctgccaag
attgcctataagaggctggtgctgatgaacatgccggtggacgaggacatgtcggtgcat
ttcacctcaacgctcatgtctctcatccgcacggcgttggacatcaaaatagctcgaggt
ggtgaggaccgcatcgctttggatgctgaacttcaaaaagagatcagcatcatctggcct
tacctgccgcagaagaccctggacctcctggtgcccatcaacaaagacacggacatgacg
gtggggaagatttacgcctccatgatgatcatggactacttcaaacagaacaaggccaag
aagctgcggcaacagctggaagctcagaagagcaacctgatcttcaagcgtctggacgcg
tccacccttcctgaggacattctctccaacacgcaacctctacccatgatggcacacagc
gctggctccgccttgacacgtgggggatttgtggctttgagtcctatttcgccacaggag
ctatttttgcagtccatgaactcagacactgatgctggccagcaacagaacccgaccgag
gctgccggcggatcattgaagcgttcggcctccaccgtgtcggatcaacaagtcaacggt
ctttggcaggaagagaaaagtcccgagcgcttttatcgacctcgtcacaagagctacaag
gctgcagtgtctcggtccgagcggggtcgatccaaggagcgttgccatcttctttctcca
aacgcgtcccgctgcaactctgaggaacgcagcctgcagccgtcacgctcctccagcgtg
gagaggacacgcccccgggacaaacaagggaacagctcggacagtcccgtgccgtccaca
tcagagtccagcacccccagtgtccgacgaccttcatcacagaccccaacgcgctctcgt
cctcacatcacctactcgccgctcgtgtgtcgcgccgacccctccgtcggcgagcacgac
gggacggaggcgacccggcgggagcaggagacagtcggcggcgagcgggaaggggacaag
gcgggtcgtcacccgtcaccgctgcgccgctacccctccgagcccttcctggcgtcccag
gaggaggaccacagccccgatcccaccgggcccatggagacgttgaccttcgaggcagct
gtggcctgcagcctgggacgctcaaacaccgtcagctcggcccgcccgcgcttgcggacc
ggctggcagatccccaacggacactttcgcaaacgtcttgcgcagacggcctcagtggcg
ggctgcgatacgctcagcgacacggaggaggacgaccgctgctag
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integrated database retrieval system
