Syngnathus scovelli (Gulf pipefish): 125985329
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Entry
125985329 CDS
T08785
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125985329 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sscv01009
]
125985329 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125985329 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125985329 (rb1cc1)
Protein phosphatases and associated proteins [BR:
sscv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125985329 (rb1cc1)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Autophagosome formation proteins
ULK complex
125985329 (rb1cc1)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
125985329 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Abhydrolase_11
Motif
Other DBs
NCBI-GeneID:
125985329
NCBI-ProteinID:
XP_049604016
LinkDB
All DBs
Position
17:5974713..5984190
Genome browser
AA seq
1580 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAIQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILSDRDPTIPKTAFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVANKLSSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLVKFDTAYSTYQH
DLEEIKFKLTKLGTAVSVMARIPLLECLTRQSHREHTKKSASSPEKDSDETEGEKSTESV
LCAQDAQRGLKLRGSTETSKSEGGAERDPSQMRDSGMLRAALPDEDIPMSGNMPQFNVTL
LDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLADCRDTIAKLDNQNMKAIKGLEDR
LYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLNNHR
KLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLERVRVVEA
LSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKQLYEAEKFKRENFGKLFSKGKSF
LRNRLFRGFDAWPPTSFCTRKPRRFDDELPDISLDDLQYLKSCCPVEVQPFLMVPTMCDF
DPLKEHTEKLHKLVQATQSLDDMSETITNMLSEQRASCSQSTHGSSALTPQSAASPCGQA
TTFNAPTSLSLQGASSHPLHVTAPSEDLSPDSIDAQTFDFETIGHPNMDAVMQPGSLDLD
SLAESPESDFMSAVNEFVIEGNLTSPNPISDPTSPEMMVESLYSSVINAIDNKRIQDTTT
LERENSRIAELHQAINSYRSAAEESHSNLRCVKDDLCRLRSQISKEQNDFGFALRSVSSE
VRDTVDNICQALELELKEQHRSEMMAVRQAYEKQVRSLTEDNRVNQNIVRDVQRAMLDLE
RLMERKEKELTQLEGDKALLLQTEIDLREKINTSEQLMSDREAELQKLLACRDSLQSQLE
NLHFQIELDQQKIRQELEAEAQAHLTELEDRLKVEHTAELGNLTKEHQEALDQVAADNMA
KLKEATEQHNSALKEKDLQIKDLEARNADLVELRCKVEMELALKETEIEEVRVLLEQTKM
QQAEAVSSQVAAQTQVLNDELAKTKQELQVKNEEYELDRAQVKSLLNIEKDHCISELVER
HEKEMAVLRSEFSALQQQAQDADRSHTDRVKNLTQELDQQVSAANEEKELQFRNFQELER
ELRTESSNLRAENQLLCKRLEDEASDEALKALQLQNEEMQKRLTDRIRQLEDELHNRPSL
ASDAGLPLCAESRADAPLSLDSALQQERTSLHTQLELLERRKNEEIQNLKTSLIAEQQTN
FNTVLTRERLKKEQIINDLTEKLQSVTQQQEKDKALIETLSEDRASVMQEKKHLEEELNR
LRGTALASSAIFVAHDVSGACSSVVVADGDRLASVATLRDDGDVDSAVEASMVTVHDNIL
MSEEKQRILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIIL
DERHDNYVLFTVGPTLYFLHSESLTALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRF
KVPLGTKFYRVKAVPWNRRV
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggttaacaatggcagtacactgacatttgacaccgatctc
gctgtccaaactgtactggagcttaaacatgccatccaggcgaaatataagattgcaatt
caacatcaagtcctcgttgtcaatggaggggaatgtatggctgcggagcgacgtgtctgc
agctacagtgctggcactgaaacaaatcccatattcctgttcaacaaggagatgatcttg
tccgaccgggatccaaccattcccaaaaccgccttctccattgagagtgagattcaggtg
aaggtggaagagtcgctgctgatgccagctgtctttcacaccgttgcctctcgaacacaa
ctcgctctggaaatgtttgaagttgccaacaagcttagctcgttctgtgaacgtttggtt
catgacgaacacctccagcaccaaggttgggccgccatcatggccaacctggacgattgc
acgctgtcctaccagaagctactcgtgaaatttgacacagcctactccacctaccagcac
gatctggaagaaattaagtttaaactgacaaagctgggaacagcggtctccgtgatggcc
aggatacctctgctggaatgtttgacgagacaaagccatcgagagcacacgaagaaatcc
gcctccagcccggagaaagattccgacgagacggaaggagaaaaatccactgagtcggtg
ctatgtgcccaagatgcacagcggggcctcaagctacgaggttcaaccgagacgtccaaa
agcgaaggtggtgctgagagagacccaagtcaaatgagggacagcggaatgcttcgagcc
gctttgccagacgaagacatccccatgtctggcaacatgccccaattcaatgtcacgctg
ttggactggatcaacgtgcaggatcgacctaatgacgtcgagtccgtcgttaggaaatgc
ttcgattctattaacaggcttgacccgcggatcattcaacctttcctagcagactgtcgc
gacaccatcgccaaattggataatcaaaacatgaaagctatcaaggggctggaggaccgc
ttatacgccctcgaccagatgattgcgagctgcaagaagctggtcaatgaacaaaaggaa
cttgctcagggatttttagccaatcagaagcgggctgaaaacctgaaggacacatcagtt
ctacccgacttatgtctgagtcataccaaccagctgatgatcatgttgaacaaccacagg
aagctgctggacatcaaaaagaagtgcaccaccgccaaacaggagctcgcaaacaacctt
caagtccgactcaaatggtgctgctacgtgatgctccacgcagaccaggatggcgagaag
cttcaagctctgctgcgactccttactgagctcctagaacgggtgcgcgtggtcgaggcc
ctcagtacagtgccgcagatgtactgcttggcggtggtggaagtcgtccggaggaaaatg
tttatgcgacactacagagagtgggcctatgcgcttgtgaaagatggcaaacaactgtac
gaagcagagaagttcaaaagggagaactttgggaaactcttcagtaagggaaagtctttc
ctgagaaaccgcttgtttcgagggtttgacgcgtggcctccgacatcattttgcacacgc
aaaccgcgacgattcgatgatgaactccctgacatctccctcgatgacttgcagtacttg
aaatcgtgctgtcctgtggaggtgcagcctttcctcatggtcccgacaatgtgcgatttt
gatcccttgaaagagcacacggagaagctccataagctggtccaagctacgcagagtttg
gacgacatgtccgaaaccatcacgaacatgctgagcgaacaaagggcgtcatgtagccag
agtacacacgggtcaagcgctttaacgcctcagtcggcagcgagcccgtgtggccaggcc
acaaccttcaacgctcccacttctctcagcctgcaaggagccagctcgcatccgctccac
gttaccgccccttccgaggacctttctccggacagcatcgacgcacagacctttgacttt
gagaccatcggccatcccaacatggatgccgtcatgcagcccgggtccctcgacctggat
tccctggcagagagccccgagtccgactttatgtccgccgtcaatgaatttgtgatcgag
ggcaacctaacctctccgaaccccatcagtgacccgaccagccccgaaatgatggtggag
tctttgtattcatccgttatcaatgccattgacaacaagcgcatccaggacaccacaacc
ctggagagggagaactcgagaatcgccgagctccatcaagccatcaacagttaccgatcg
gccgccgaggagtcccactccaacctgaggtgcgtgaaggacgacctgtgtcgcctgcga
agtcagatctcgaaagagcaaaacgactttggcttcgccctgaggagtgtgagttcagag
gtccgcgacacggtggacaacatctgccaggcgcttgagctggagctgaaagagcagcat
cgaagcgagatgatggccgttcggcaggcgtatgagaagcaggtccgctcgctaactgag
gacaaccgagtcaaccagaatatcgtgcgagatgtgcagcgagccatgctggacctcgag
aggctgatggagcgcaaggaaaaagaactcacccagctggagggcgacaaggcgcttttg
ctccaaacagagatcgacctgagagagaagatcaacacgtcggagcagctgatgagcgac
cgagaagccgagttacagaaactcttggcttgcagggactctctgcaaagtcagctggag
aatctgcatttccagatcgaacttgaccagcagaagattaggcaggaactggaggctgag
gcacaggcgcacttgacggagcttgaggacagattgaaggtggaacacacggcagagctg
ggtaacctcaccaaggagcatcaggaggctttggatcaggttgctgctgacaacatggcc
aagctaaaggaagcaacagaacagcataacagtgccctaaaagagaaggaccttcaaata
aaagatcttgaggctcgcaatgctgatcttgtagagctgcgttgcaaagtggagatggag
ttggccctcaaagagacagaaatcgaggaggtgagggtcctactagagcagaccaagatg
cagcaggctgaggcggtgagctcccaggtagcggcccagacgcaagtactcaacgacgag
ctcgcaaagactaaacaagaactccaggtaaaaaatgaggagtacgagttggaccgagcc
caggtgaagagcctcttgaacattgagaaagaccactgcatctcggagctggtggagaga
catgagaaggagatggctgtgttgcgaagcgaattctcagccctgcagcagcaggctcag
gatgctgacaggagccacacagaccgagtgaagaacctcacgcaagagttggaccagcag
gtatctgctgccaatgaagaaaaggaactacaatttaggaatttccaagagctggagcga
gagttgaggaccgagagcagtaatttgcgggctgaaaaccagcttttatgtaaaaggctc
gaggatgaagcctccgacgaagcgttgaaagcgttgcagcttcaaaatgaggagatgcaa
aagagactgaccgaccggattcgacaacttgaggatgagcttcataacaggccgtcatta
gcaagcgacgcggggctacccttgtgcgccgagagccgtgcagacgctcctctctctctg
gactcggctctgcagcaggagaggacctccctgcacacccagctggagctcctggagaga
agaaaaaacgaggagatccagaacctcaagacctccctgatagccgaacaacagacaaac
ttcaacactgttctgactcgcgagaggctgaagaaggagcaaatcatcaacgatctcaca
gaaaagctccagagcgtcacccagcagcaggagaaggacaaagctctgatagaaacgctc
tctgaggaccgagccagcgtgatgcaggagaagaagcacctggaagaggagctgaaccgg
ttgcgcggcaccgccctggcctcctcggccatctttgtcgcgcacgacgtcagcggggcg
tgctcgtccgtggtcgtggccgacggggacagactagcctcggtggccaccttaagggac
gacggggacgtcgactcggctgtggaggccagcatggtgacagtccatgacaacatcttg
atgtctgaggaaaagcagaggatactcctgcttgagaggactttacacatgaaggaggaa
gagaacaagcggctcagccaaagactgatgtctcaaagcatgtcttctgtgtcctcgcgg
cattctgaaaaaattgccatcagagatttccaggtcggcgatttggttctcatcatcctg
gatgaaagacacgacaactacgtgcttttcaccgtcggcccgacgctctacttcctgcac
tcggagtcacttactgcgctggacctcaaaccagcctcggggacgtcaaggcgaccgtgg
gtgctcggaaaggtgatggagaaggagtattgccaggctaagaaggcccagaacaggttc
aaggttcctctcggaaccaaattctacagagtcaaagctgttccgtggaacagaagagta
tag
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integrated database retrieval system
