Syngnathus scovelli (Gulf pipefish): 125985351
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Entry
125985351 CDS
T08785
Name
(RefSeq) piezo-type mechanosensitive ion channel component 2 isoform X1
KO
K22128
piezo-type mechanosensitive ion channel component 1/2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125985351
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125985351
Membrane trafficking [BR:
sscv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
125985351
Ion channels [BR:
sscv04040
]
Other channels
Mechanosensitive channel (Piezo)
125985351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piezo_TM1-24
Piezo_TM25-28
Piezo_cap
Piezo_THU9_anchor
THU_Piezo1
CAMSAP_CC1
FAM210A-B_dom
Whi5
Motif
Other DBs
NCBI-GeneID:
125985351
NCBI-ProteinID:
XP_049604065
LinkDB
All DBs
Position
17:7308367..7342198
Genome browser
AA seq
2920 aa
AA seq
DB search
MASEVVCGLVFRLLLPACLAAACLFRYNVLSLIYLIYLLLIPLFPEPTCTTMQGYTGRLL
QSLCFTSVSFLLLHIIYQITVNSLLAGSSISSDFNCSAWEKSIRQIGFESVIGADAGNGI
RIFVPDIGMCMVGGAIWFLCRSLVQKRPPEDMAQDNAHFQAEEQEEDEKLSLEDHILLEE
DSDGGYEAEEDEEDEVEGEGEVAEEEEEEEEEEAKESVKMKILRLVGKVASKVKDVIGNL
ITTAGKVVVTILLGTTGMMLPSLTSAVYFFIFLFLCTWWSLRRTFDTLMFSCMCVLMAIF
SAGHLVVLYLYQFQFFQESVAPDDGFIRYFGMSPIIQSDCSRTWKLMVHPKRKWHHFVNP
VMLLLLYYTLATLIRLWLQEPLDQLTDDEEEDACEEDEPLGNGTNTSANRKRQMWWESRQ
GTDEKNLLSTQDAISATEVVLAPNGTSFDFTVTDNGPRYLDLYATPHYKGDQSMGDSTAA
EKEDLCVYEVSLPPEDGESPSGEDKSGGSEDALTKRGVGAMVKVFHFIMKQSYICALIAM
MAWSITYISWLTFVFLIWSCILWMVRDRRRYAMLSSPFMVAYGNLLIVLQYFFSFEGITH
VPGLSVPKKNLFHSISSKVLCLLSFWLLLRQTLTEKLEKQKEEEAGLLGVQVEEQKMKEE
EKSETEDEQDLMHVLGNLVMALLVKYWIYICGGMFFFVSFEGNIVMYKIIYMMMFLSCVV
LYQVHYEWWRRILKYFWMSVVMYTMLVLIAVYTFQFRSDSAENKDSFKDLGLEKFSVSEL
FTRIFIPTSFLLVCILHLHYFHDRFLQLTDLQAVVAKEESTIYRLVHPEGSLADLTMLSA
SSAEASLSRSKEEEPGEQTLVVVKDDSMSSAGDTKPGGLSDARQSSTDDSQRFSTATETQ
SSTEQSSDLRSKWHLVVDRLTVLFLKFLEYFHKLQMFIWWLLEIHIIKIVSCYVVLVSIW
EVSLLNYVFLASWAFALPYSQYRPLASRVCSVWTCVIIVCKMLYQLESIKPKTYSKICSM
PAAYTPEQQTMMRDSLLYKGQVDPANWVGLQKSDDLLGYIRHNLLILALLAFEVTIYRHQ
LYFRVRNKLSPPAARIIFHDVTRQHLDVGIVCFIKYFINYFFYKFGLETCLLLGVNVIGQ
RMDLYAMLHAFALITVMYRRRRKAIAEIWPKYCCFLACMLTFQYFICIGIPPAACKDYPW
RFPSYSADSNVVMWLYVPDFLSRPNPSFLIYDFMLLLCASMQRQVFDDENKAAVRIMAGD
NVEICRDLDASSFSVHNPVPDFIHCRSYLDMLKVIMFSYLFWFVLTIIFITGTTRISVFC
MGYLVACFYFLLFGGELLLKPIKKILHYWDFLIAYNIFVITMKNILSILACGYINSLIPH
KCWLIQLFSLACTIKQYKINTNQEHLKVDQRCELPSDDAGIIWDSICFAFLLLQRRVFMS
YYFLHVVADIRASQILASRGAELFQATIVKAVRARLEEERKSVEQLKRQMERIKVRQQKF
KRGKERMLSIAQESVEGQTLAPPPPDEEDEGAQRAKAKTKKKHWWRPWVDHASMVRSGEY
YLFETDSEEEEEEDDLKDEEPPRRSAFQFLYRTWIKDPKAALKARARDKRKFWKRYTKGG
RHKKSKKQETYLGIETDDLSDSQEQDDNSGPDNIFKRVFNIIKFTWVLLQTTVDSFTRWM
NEVCREYIDISTVLRIERCMLTREVKKGNVPSRESIHVYYQKAMRLNMSRQASMDLLSED
ESGGSSTGRRRRRRQRAYPMESQASTASRDSISSAYTEATTLFSRQSTLEDLDGMPECIP
KTSERPRPKLRKMYGLDMSTSSVDSGSSFVSRQGTAETIEEEVEDERDHREEGPRRLPQR
SQELEESEDEGGACGESETHPQEDKLEVGQEMEHMEGPVLSDEGPEVEHGERSVIWASFK
QDEEPSNQLQEDAISESEGGGEGCQQDFPHTGDLLCPNDTDASKTSDGDVPPSYSKAVSF
DRLEMSDDDDSDEDRRRRRMLMTSDSRSDSRSDILLPSMTTELTASELLLNKMFYDEELD
QSEKFYQNQPLVLQLCYALYNMLVAHSEMVCFLVIIINHMVSANFATLVLPVTIFLWAML
SVPRPSKRYWMTAIVYTEVTIVIKYFFQFGFFPFNQNKLLKENPYHPPNIIGVEKKDGYV
HYDLVQLLALFFHRSILKCHGLWDEDNPKGKRAASRQSESEDEGSRIDESERESEPTSAS
VAATNASSGRRGSTNTLRSINFGTSMDSGQVQLHKQQENTYQRRTSSSGGSHVSHKSLHS
SDRAKRGSVTSRGSSHKDGSEASVHQKTKKQMILEKLKEQLFKARAYSVKMFMEIYVPMR
QFFYDLIHPEYSAVTDVYVLMFLADTVDFIIIVFGFWAFGKHSAADITSSLSEDQVPGPF
LVMVLIQFGTMVVDRALYLRKSVMGKVIFQVFLVFGIHFWMFFILPGVTEKRFNKNTVAQ
MWYFVKCIYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRMVPFLTELRAVMDW
VWTDTSLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIVMLLI
CIVWFPLLFMSLVKSVAGVVNPPLDVSFEITLAGFQPIFTMSAQQKQLHEVSEKDFNDFI
KQYNDNEKALEWLGGYMPGDLVIAELKGSSNSLWTISPPSRKTLIDMLALNDHFPITVSW
SVQRNLSLGAKAETASGKRVTNLSNDTKRELMQLLRGDENQSHVMLTDIFPRYIRAPSDS
DAKPVEQLNKADEKMWNISVSLQQVKTAQRQLQEWWIVNQTERGPIEKSQNHDAYLELYV
FSDQVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHTIMFEELPNVDRILKLCT
DIFLVRETGELDLEEDMYAKLIFLYRSPETMIKWTREKTQ
NT seq
8763 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggaggtggtgtgcgggctggtcttcaggctgctgttgcctgcctgcctcgca
gccgcttgtctcttcaggtacaacgtcctgtccctcatctacctcatctacctcctgctt
attcctctcttccccgagcccacttgtaccaccatgcagggctacacagggcgtctgctg
cagtcactgtgcttcaccagtgtgtccttcctgctcctgcatattatttatcagattacg
gtcaacagcctcctggccggcagctccatcagctccgacttcaactgttctgcgtgggaa
aaatccatcagacaaattggatttgaaagcgtgataggtgccgacgcgggaaacggcatc
cgaatattcgtaccggacatcggcatgtgcatggtggggggggccatctggtttttgtgt
cgcagtctggtacagaagaggccgcctgaggacatggctcaggataatgcccacttccaa
gctgaggaacaagaagaagacgagaagctgagcctggaagaccacatcctgctggaggag
gactcagacggtggctacgaggctgaggaagatgaggaagatgaggttgagggagaaggt
gaggtggcggaggaggaggaggaagaagaagaagaagaagccaaggagagcgtcaagatg
aagatcctgcggctggtgggaaaggtggcatccaaagtcaaggatgtcattggaaacctg
atcaccacggcagggaaggtggtggtgaccatcttgttggggaccacagggatgatgctt
ccttccctcacctcggccgtctacttcttcatcttcctattcctgtgcacctggtggtct
ctgcgccgcacttttgacacgctaatgttcagctgcatgtgcgtgctgatggccatcttc
agtgccggccatctggtggttctctacctctaccagttccagtttttccaggagtcagtc
gcgccagacgacggcttcatcaggtactttggcatgtcacccatcattcagagtgactgc
agccgtacgtggaagctgatggtgcaccccaagagaaagtggcaccattttgtcaaccct
gtcatgctgctgcttctctattatacactggccacgctcatacgcctctggctgcaggag
cctcttgaccagctgaccgatgacgaggaggaagacgcgtgcgaggaagacgagccgctc
gggaacgggacaaatacctcggccaacaggaagaggcagatgtggtgggagtccaggcaa
ggcacagacgagaaaaatttgctctccactcaggatgccatcagtgcaactgaggtcgtg
ctagctcccaacggaacatcctttgacttcacggtgactgacaacggtccgcgctatctg
gacctgtacgccactcctcattacaaaggagaccagtccatgggtgactctacagcagca
gagaaggaagacctatgcgtgtacgaggtgagccttcctcccgaagacggggaatcgccc
tcgggagaggacaagtccggaggaagtgaggacgccctgaccaagcgaggcgtgggcgcc
atggtcaaagttttccacttcatcatgaagcagagttacatctgcgcgctcatcgccatg
atggcgtggagcatcacatacatctcgtggcttaccttcgtcttcctcatctggtcctgc
atcctgtggatggtgcgagaccgtcggcgctacgccatgttgtcgtcacccttcatggtg
gcctacggcaacctcttgatcgtcctgcaatacttcttcagctttgagggcatcacgcat
gtgccgggactctccgtgcccaaaaagaacctctttcattcaatttcctccaaggtgttg
tgtctgttgagcttttggctgctgttgaggcagaccctcactgagaagttagagaagcaa
aaggaggaagaggcgggtctcctaggtgttcaggtggaggagcaaaagatgaaagaggaa
gagaaatctgagactgaggacgaacaggatctcatgcacgtgctgggcaacttggtgatg
gccctgctggtcaaatactggatctatatctgtggcggcatgttcttcttcgtcagcttt
gaggggaacatcgtcatgtacaagatcatctacatgatgatgttcctttcctgcgtggtg
ctctaccaggtgcactacgagtggtggcgaagaatccttaaatatttctggatgtctgtg
gtgatgtacaccatgctggttctcatcgccgtttacaccttccagttcagatccgactcg
gcggagaacaaagacagtttcaaggatttgggcctggagaagttttcagtgtccgagcta
ttcaccaggatcttcatccctacatccttcttgctagtgtgcatcctgcacctgcactac
ttccacgatcgcttcctgcaactcaccgacctgcaagcagtggtggccaaagaagagagc
actatctataggctggttcacccggaaggcagcctggctgacctcactatgctcagcgcc
agctccgctgaggcctcgctgtcccggagcaaggaggaagagccgggggagcagactctg
gtagtagtgaaggacgactctatgtcttcggcgggtgataccaagccaggcggcctctcc
gacgccaggcagtccagcaccgacgacagccagcgcttcagcacggccaccgagacccaa
tccagcactgagcagagttccgatctgaggagcaagtggcacttggtcgtggaccggctg
acggtgctcttcctcaagttcctcgagtacttccataaactgcagatgttcatctggtgg
ctgctagagatccacatcattaagattgtctcctgctacgtggtgctggtctccatctgg
gaggtatcgttgctcaactacgtgttcctggcatcgtgggcctttgcgttgccctacagc
cagtatcggcctctggcgtcccgcgtgtgcagcgtctggacgtgcgtcatcatcgtgtgc
aagatgttgtaccagctcgaatccatcaagccgaaaacgtactccaagatctgctccatg
ccggcagcctacacccctgagcaacagacgatgatgagggactctctgctctacaaaggt
caggtggatcctgctaactgggtgggcctgcaaaagagcgacgacttgctgggctacatc
aggcacaacctcctgatcctggctctgctggcgttcgaggtgaccatctaccgccaccaa
ctgtacttccgtgtgaggaacaagctgtcgcctcctgctgctcgcatcatcttccacgac
gtgacgcgccaacacctagatgtgggcatcgtgtgcttcatcaaatacttcatcaactac
ttcttctacaagttcggactagagacttgcttgctgctgggcgtgaatgtgattggccag
cgcatggacttatacgccatgctgcacgccttcgccctcatcaccgtcatgtaccggcgc
cgcaggaaggccatcgccgagatctggcccaagtactgctgcttcctggcctgcatgctc
accttccagtacttcatctgcatcgggatcccccccgcggcgtgtaaagactatccttgg
agattcccgagctactcagcagactccaacgtggtcatgtggctctacgttcccgatttc
ctctccaggcccaatccgtctttcctcatctatgacttcatgctgctgctgtgcgcctcc
atgcagaggcaagtgtttgacgacgagaacaaggcggccgtgcgcattatggccggggac
aacgtggagatctgcagggacttggacgcgtcctcctttagcgtgcacaaccccgtccct
gacttcatccactgcaggtcgtacttggacatgctgaaggtgatcatgttcagctatctg
ttctggttcgtgttgacaatcattttcatcacgggcaccacacgcatcagcgtgttctgc
atgggctacctggtggcctgtttctacttcctgctcttcggcggtgagctcctgctcaag
cccatcaaaaaaattctccactactgggacttcctcattgcctacaacatctttgttatc
accatgaagaacattttgtctattctggcttgtggatacatcaactctctgatcccccac
aagtgctggctcattcagctcttcagtctggcatgcaccatcaagcaatacaaaatcaac
accaaccaggaacatcttaaagtggaccagcggtgcgagctgcccagcgacgatgcaggc
atcatctgggacagcatatgcttcgccttcctgctgctgcagcggcgcgtcttcatgagc
tactacttcctgcacgtggtggccgacatcagggcctcccagatcctcgcctccaggggg
gcagagcttttccaggccaccatcgtgaaggcagtgcgggcacgcttggaggaggagcgt
aaatctgtggagcagctgaaacgacagatggagcgcattaaggtgcggcagcaaaagttc
aagcgtggcaaggagaggatgctgagcatagcgcaggagtcagtggagggacagacgctt
gccccgccccctcccgacgaggaggacgagggagcgcagcgagccaaagccaagaccaaa
aaaaagcactggtggaggccgtgggttgaccatgcttccatggttagaagcggcgagtat
tacttgtttgagaccgacagcgaggaggaggaggaagaggacgatttgaaggacgaggag
ccaccgaggaggtccgccttccagttcctctaccgtacgtggatcaaagaccccaaagca
gccctgaaggcaagagccagagacaaacgcaagttctggaagagatacaccaaaggaggc
agacacaagaaaagcaaaaagcaggaaacttacttgggcatcgagacggacgacctgtcc
gacagtcaagaacaagacgataactctggaccagacaacatcttcaagcgtgtgttcaac
atcatcaagttcacatgggtgctgctgcagaccaccgtggacagcttcacccggtggatg
aacgaagtgtgccgggaatacatcgacatctccaccgtgctgcgtattgagcgttgcatg
cttaccagggaggtcaagaagggcaacgtgccgtcccgagagagcattcacgtctactac
cagaaggccatgcggctcaacatgtcacggcaggccagcatggacctcctcagtgaggat
gagtcgggggggagttcgacggggcggcgtcggcggcggcggcagagagcctacccaatg
gagagccaggcctccacggcctccagggacagcatatcgagcgcttacaccgaggccacc
acgctgttttctcgtcagtccaccttggaggacctggacgggatgcccgagtgcatcccc
aaaaccagcgagcggccacggcccaaactgcgcaagatgtacggcctggatatgtccacc
tcgtccgtagacagcggcagcagcttcgtgtccagacagggcactgcggaaaccatagaa
gaagaagtggaggatgagcgggatcatcgcgaggaaggaccacgacgtcttcctcagagg
tcccaggaactggaggagtctgaggatgagggtggagcctgtggtgaatcggagacgcat
cctcaggaagacaagttggaagtgggacaggaaatggaacatatggaggggcctgttctc
agcgacgagggaccggaagtggaacatggcgagaggagtgtcatctgggcgtctttcaag
caagacgaagagccttctaatcaactccaagaggacgccattagtgagagcgagggtgga
ggagaaggatgtcagcaggactttccacacacgggggatctcttgtgccccaatgacacg
gacgcctcaaagacgtcagacggcgacgtgccgcccagctacagcaaggcggtcagcttc
gaccggctggagatgagcgacgatgacgacagcgacgaggataggagacggcggcgcatg
ctcatgacctcagacagccgctcggacagcaggtccgacatcttgctgccttccatgacc
acggagctgacggccagcgagctgctgctcaacaagatgttctacgatgaggagctggac
cagtcagagaagttctaccagaaccagccgctggttctgcagctgtgctatgccttgtac
aacatgctagtggcgcactctgagatggtttgcttcctggtcatcatcatcaaccacatg
gtgtcggccaactttgccacgctggtgctgcccgtcaccatcttcctgtgggccatgctg
tcggtgccgaggcccagcaaacgctactggatgaccgccatcgtctacactgaggttacc
attgtcatcaagtactttttccagtttggcttctttccctttaaccaaaacaagttacta
aaggagaacccttaccacccgcccaacatcatcggcgtggagaaaaaggacggctatgtc
cactacgatctcgtccaactcctggcgctcttctttcacaggtccatcctcaagtgccac
ggcttgtgggacgaggacaaccccaaggggaagagggcggcgtcccgtcagagcgagtca
gaggatgaagggagccgtatagacgagagtgagagggagtcggaacccacctccgcttcc
gtcgccgccaccaatgcctcctcgggtcgccgtggctccaccaacaccttacgctccatc
aactttggcacctccatggactcgggccaagtgcaactgcacaaacagcaggagaacacc
taccagcggcgcaccagttccagcgggggctcgcatgtctcacacaaatccctgcactcg
tccgaccgagccaagcggggaagcgtcacctcccgcggcagcagccacaaggacggcagc
gaagccagcgtgcatcagaagaccaagaagcaaatgatcctggagaagctcaaggagcag
ctcttcaaggccagagcttatagtgtcaagatgttcatggagatctacgtgcccatgcgt
cagttcttctatgacctcatccaccccgagtacagcgccgtgaccgacgtctacgtgctc
atgttccttgccgacaccgtcgacttcatcatcatcgtctttggcttctgggcttttggt
aaacactcggcggcagacatcacttcgtcgttgtcggaggatcaggtccctggacctttc
ttagtgatggtcctcatccagtttgggaccatggtggtggaccgcgccctctacctgcgc
aagtctgtcatgggcaaggtcatcttccaggtcttcctggtcttcggcatccacttctgg
atgttcttcatcctgccgggagtcaccgagaagcgtttcaacaagaacactgtggcccag
atgtggtattttgtcaagtgcatctactttgggttgtcagcgtatcagatccgctgcggt
tatcccacccgtgtgttggggaacttcctcaccaagagctacaattatgtcaacctcttc
ctctttcaagggttccgtatggttccgttcctgactgagctgcgtgccgtgatggactgg
gtgtggacggacacgtcgttgtctctgtccagctggatctgtgtggaggacatctacgct
cacatcttcatcctcaaatgctggcgagagtcagagaagaggtaccctcagccacgaggc
cagaagaagaaaaaggtggtgaagtacggcatgggcgggatgatcgtgatgctgctcatc
tgcatcgtgtggttcccgctgctcttcatgtcgctcgtcaagtccgtggcaggcgtagtc
aatccgcctctggacgtctccttcgagattacactggcgggattccagcccatcttcacc
atgagcgctcagcagaaacaactgcatgaagtctctgagaaagactttaacgatttcatc
aaacagtacaatgataatgagaaagcgctggagtggctggggggctacatgccaggtgac
ttggtgatcgcagagctgaagggcagctccaactctctgtggaccatcagccccccaagc
aggaaaaccctcattgacatgctggctctgaacgaccacttccccatcacggtgtcctgg
tccgtgcagcgcaacttaagcttgggagccaaggcggagacggcgtccggcaaacgggtc
accaatctctccaacgataccaagagggagctcatgcagctgctcaggggagacgagaac
cagtcgcacgtgatgctcaccgacatcttcccgcgctacatcagggcgcccagcgactcc
gatgccaagcctgttgagcagctgaataaagcagacgagaagatgtggaacatcagcgtg
agcctacagcaagtgaagacagcccagcgtcagctccaggagtggtggattgtcaaccag
acggagcgcggacccatcgaaaagagtcagaaccacgatgcctacctggagctttacgtc
ttcagcgaccaagtcagcccacccagcctgggcttcctggccggatacgggatcatgggc
ctatacgcgtcagtggtgctggtgatcggcaagtttgtgcgcgagttcttcagcggcatc
tcgcacactatcatgtttgaggagctgcccaatgtggaccgtatcctcaagctgtgcacc
gacatcttcctggtgcgcgagacgggagagctggatctggaggaggacatgtatgccaag
ctcatttttctctatcgctcgcccgagaccatgatcaagtggacacgcgagaagactcag
tga
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integrated database retrieval system
