Syngnathus scovelli (Gulf pipefish): 125985431
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Entry
125985431 CDS
T08785
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125985431 (rc3h1b)
04121 Ubiquitin system [BR:
sscv04121
]
125985431 (rc3h1b)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125985431 (rc3h1b)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125985431 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
Prok-RING_4
zf-CCCH
zf-C3HC4_2
zf_CCCH_4
zf-CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
125985431
NCBI-ProteinID:
XP_049604225
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All DBs
Position
17:complement(2560715..2573342)
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AA seq
1125 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALISSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKLKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGPEEGLPLDVSVTRKPSPL
TNGSVAPNLPQLIARGADTVPYELLRKPLKMDGGSSSAPGSPPDLLDTMPKTGMPLPPHA
LAHPRMPSDHLSGVKQMPVARGSPMYPQQQLPEMFYSDTRPPPSASQYEPSQYPPGYPYQ
QPPQYVSRDYIRNPPPPSESGPPYHDPYPGYGPSERPYQAPHSGPHSGPPFSYPHPSHYE
RVRHGTYAGPPPPPPPPPQPYLSPRDGLVRISSTTPLDVPPQSAGQATSMYHHPEPSVRD
RYPPEGYYPSGAQSQPMRTCVRASYAGSQPSLDYLHRRRLELLSQLEERKVISPPPFAAS
PTLSHPFPSDYPPEYGDESTHSIGKCREPDYAGQYSPWSCDTISSYIGTKDAKPKDVLAP
GAMDMMNVDAKVLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTGP
VQAMVSTPQNPNSKHMSMAEYMYGSHVGWGGASYPSHQTAQEREQLKIELQQVNQQISQQ
TQMQSIESASNLLQRETSALAGPPVSSNQVQAAAVQSQQSLKWPTGGVSAAAAVSSEQLS
LELHQVEREIGKRTREMAMENQVAHEVQQYKMKSAENGQPEHKTQLEEISLALGEVSNGS
SSLQEGAVGGSMLSLTNKTSTLSLCSDPVGTSSEMQKNGVVHSCS
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgccagttcaagcaccacagtggacagagttcctgctctgtcccatctgcacacagaca
tttgaggagacggttcggcggcccatcagtttgggctgcggacacaccgtctgtaagatg
tgcctgaacaagctgcaccgcaaggcctgtcccttcgaccagacggccatcagcacggac
atcgagcagctgccggtcaacacagccctgctgcaactggtgggaggccaggttcctaag
gcccagccagtggccttgattagcagtcctgaggactcgcagcattatgaggaggcccgg
caatgtgtggaggagctggccctctacctgaaacccctcagcaacacacgaggagtcggt
ctgagcagcacagcccaaagtatgctgagtcgacccatgcagaggaaactggtcactctg
gtccactgccagctcgtggaggaggaaggccgcgtgcgggccatgagggctgcccgctcc
ctgggcgagcgaaccgtcacggagctcatcttgcagcaccagaacccccagcagttgtcc
tccaatctgtgggctgccgtccgtgcgcgcgggtgccagttccttggcccagcgatgcaa
gaagaggccctgaaactggtccttcttgcactggaggatggctcggctctgtccaggaag
gttttggttctctttgtggtccagcggctggaacctcgctttccgcaggcctccaagacg
agcataggtcatgtggtgcagcttctctacagggcctcctgcttcaaggtgaccaaacgt
gacgaagattcatccctcatgcaactgaaggaggagttccgcacttacgaggctctgcgg
cgtgagcacgactctcagattgtgcaaattgccatggagggcggcttgcgcatcgcgccc
gaccagtggtcttctctcttgtatggggatcagtcccacaagtcacacatgcagtccatc
atagataagctgcagaccccagcatcctttgcccagagtgtccaagagctcacaatcgcc
ctgcagaggaccggcgacccagctaatcttaataggctgcggcctcatctggaactgctt
gccaacatcgatcccagccccgacgctcccccgcccacctgggagcagctggagaagggc
ttggtggcggtgaagacggttgtgcacggcctagtggacttcatccagaaccacagcaag
aaaggggctgaccctcaacagcctccacagcacagcaagtacaagacatacatgtgtcgt
gacatgaaactgaaaggaggctgtccccgcggagcgagctgcacctttgctcactctcag
gaagagctggagaagtatcgaaagatgaataagcgcttggcggctcgcctgcccggttca
ggcgggcctgaagaaggccttcccctggacgtgtccgtgaccaggaagccttcgcccctc
accaacgggagtgttgcgcccaacctgcctcagctcatcgcgcgcggcgcagacacagtc
ccgtacgaattgctgcggaagcccctcaagatggacggagggagctctagtgccccggga
tcaccacctgacctcctggacaccatgcccaagactggtatgcctctgccacctcatgcc
ctggctcacccacggatgccttcagatcatctctccggcgtgaagcaaatgcctgttgcc
cgaggctcgcccatgtacccccagcagcagctccccgagatgttctactccgacacgcgc
ccgccaccctccgcttcccagtatgagccatcgcagtatcctccagggtacccctaccag
cagccaccacagtatgtttctcgggattacatccgtaaccctccgcccccgagcgagtca
ggacccccttaccacgacccataccctggttacgggccatcggagcgcccttaccaggct
cctcactcgggtcctcactcgggtcctcccttttcgtaccctcacccatcgcactatgaa
cgtgtacgtcacgggacttacgctgggccgccgccgcctccgccgcctcctccgcagcct
tacctgtcaccgagggatggtctggtcaggataagctctactacgccgttggatgttccc
ccgcagtcagccggacaggctacctccatgtaccaccacccagagcccagtgtgcgcgat
cgatacccaccggaaggctactacccatcaggagctcaatcgcaacccatgaggacttgt
gtcagggcttcgtatgccggctcccagcccagtctggactatctccaccgccgtcgcctg
gagctcctctcccagctggaggaaaggaaagttatttctccaccgccatttgcagcctcc
cctactctctcgcatccgtttccaagtgactatcctcctgagtatggcgatgagagtacc
cacagcatcgggaaatgcagagagccagactacgccggccaatactctccatggtcgtgc
gataccattagctcctacatcggcaccaaggatgccaaacctaaagatgttctggctccc
ggtgccatggacatgatgaatgtggacgctaaggttctgagggaaccgtcgctggaggcc
ccccggaggggtgcagaagtaaaggacgacgaccccattatcccatttggtccccagccc
acagtgtcgcgctttggcgccatctcccgtacctccaagacgggttaccagaccggccct
gtccaagctatggtctccaccccacagaacccaaactctaaacacatgtccatggccgaa
tacatgtatggaagtcatgtgggttggggcggagcttcgtacccctcccaccagacagcc
caggaaagagaacagttaaagattgagctgcagcaggtcaaccagcagatcagccaacag
acacagatgcaaagcattgagtctgccagtaacctgctgcagagagagaccagtgcttta
gcaggcccgccagtgagcagcaaccaagttcaggctgccgccgtgcagtcgcaacagtcc
ctcaagtggccaacggggggggtcagtgctgcggcggcagtctccagtgaacagctaagc
ctggagctccaccaggtggagagagagattggaaaacgcactcgtgaaatggcgatggag
aaccaagtcgcccacgaggttcagcagtacaagatgaaatcggctgagaatggacaacca
gagcacaagacccagctggaagaaatctcccttgctctcggtgaggtgtcaaacggctcc
agtagtctgcaagaaggtgcagtgggcgggtccatgctgtcactgacaaacaagacgtcg
acgttgagcctgtgttctgacccagtagggacgagctcagaaatgcagaagaacggggtt
gtccattcctgctcttaa
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