Syngnathus scovelli (Gulf pipefish): 125985437
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Entry
125985437 CDS
T08785
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125985437
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125985437
09142 Cell motility
04820 Cytoskeleton in muscle cells
125985437
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125985437
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125985437
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125985437
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125985437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125985437
NCBI-ProteinID:
XP_049604241
LinkDB
All DBs
Position
17:2501272..2518209
Genome browser
AA seq
1693 aa
AA seq
DB search
MSKQRAWCVAVAASGRAGVDXTPDDSSYDLAGDPVRGKEMERRGLLLPLILIAVLLTHVG
AKKCVCSGKSPCHCEGVKGNRGDRGLPGSLGPPGPEGHRGIKGHAGPNGLKGNTGPDGPV
GLVGDPGPEGKEGFAGSHGLPGIPGLQGPPGEPGAPGCNGTDGEDGFPGANGVPGLDGLP
GPPGPPGPKGQSAVSVGAIPGPPGLPGRTGVPGAPGFQGIPGPQGDSGSRGPDGLPGPAG
LPGSKGQGGIGIPGPAGPKGRQGPPGPPGPPGRIREFFTESLVLKGAKGDTGDTGEKGCK
GPQGDPGDGYHTKGAKGDRGQVGPEGKLGKDGEPGPAGFMGRPGPRGAPGYPGETGGTGA
KGDRGQPGQPGETKIVGTVDSLLKGYMGEPGDPGQPGRTGRQGNVGFPGPDGLPGGSSDR
QGPPGPDGSPGPKGDPGDPGDNYPGPSGAEGDPGEPGLQGDEGPPGLPEDEGEKTIVKGL
PGLKGVKGMPGPGGYDGMYGMKGEKGEPCVDCVKEGVPGPPGRQGPQGLPGFNQGPGAKG
DSGFPGSPGLPGSPGSIGIPGVPGFPGQKGEPFYDFRPGEKGEKGDTGHIGRPGNDGHPG
SPGRRGLKGVQGPPGDSFSREGAKGFPGPPGLTGRPGPQGYPGAEGYGPAGPRGTKGNLG
VPGFPGSPGFPGQKGEPGFIHAKGLPGPPGFKGQEGLPGRPGVPGTPGFIGRPGFPGQKG
ERADDAYPGPPGFPGEKGDKGLPGNPGLPSIGPPGLPGRQGLPGLPGVKGDGGYGLPGPS
GPPGLPGNDGAQGPGGDPGLPGSPGNPGLRGNPGSSGEKGNKGEIGPGGPKGSKGSCEPL
PGPAGPPGLDGNPGLPGPDGLPGEKGNRGFPGFGKPGPPGEPGHPGPTVPGPPGVTGLKG
VKGQNGLPGQMGVRGDPGPDGLPGYGPQGLPGIIGQPGQIGDPGRAGNKGSSGPPGMTGD
PGPRGPPGAPSPQPIERTGPPGDPGPPGERGAVGPWGDTGSIGTKGPRGNTGAPGRPGGR
GPPGDPGIPAFLKGVPGPPGVPGDPGLQGNPGLKGLKGDQGVSGEPGTIGAPGPRGYKGE
QGEPNYEAYGPPGPMGQKGEPGLSNTHTMKGAKGQPGTVGEHGLPGFNGLKGEPGPKGQN
GSPGYQGPRGSDGPQGSKGRRGPNGPPGTQGPPGGFGPQGPKGNQGQDGIPGPPGEKGDT
IVIEGPPGSRGDPGQPGLSGNLGLPGPPGPAIPGLRGDRGPPGSYGVSGPRGPPGGDGAC
YPGAKGDRGVDGHAGRPGYPGPPGPPGPPGPGLKGNRGEPGPTGRPGYTGPLGEPGNPGP
PGPRGTPGNPGPRGDSGPTGNNGYPGDKGDHGNLPGPPGPPGSKGFPGQPGIKGKPGYGR
VIYESGPPGLHGSPGYPGPPGNTGPVGPPGQTGLPGIKGVQGSSPVGPPGFTGHKGDKGA
SGLPGQPGGYGDPGNKGQKGVQGESGYGYVTSFLIARHSQSTQVPRCPEGTTLIYVGYSF
LFINGNERAHGQDLGTSGSCLPRFSPMPFLFCDTETNCRYASRNDYSYWLSTDAPMLPSM
VALTGEQLSSHISRCAVCETTSNVIAVHSQTTLLPECPRGWDSLWSGYSFVMQTGAGAEG
SSQPLVSPGSCLEHFRQVPFIECHGRGTCNYYPDSYSYWLASVHPDMFSKPIPQTVKGPS
RENIIGRCRVCRK
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcagcgtgcatggtgcgtagcagtcgcagcatcagggcgagcgggcgtggat
nncactcctgacgactcgtcttatgatttggctggagacccagtgagaggaaaagagatg
gaaagaagagggttgctgcttcctctgatcctaattgctgtgctgctgacccacgtcggt
gccaagaagtgcgtgtgcagcggaaagtcaccatgtcactgtgaaggagtcaaaggcaac
aggggagacaggggtcttccaggaagtctcggccctccaggaccagaaggccacagggga
ataaaaggtcacgctgggccaaacggactaaagggcaacactgggcctgatgggccagtt
ggcctcgtaggagacccgggtcccgaaggcaaagagggatttgcaggctcgcacggttta
ccgggcattccgggtctgcagggcccacctggggaaccgggggctccagggtgcaatgga
acagatggagaagatggctttcctggtgctaatggtgtccctggactggatggactccct
ggtcctccgggtcctcctggaccaaagggtcagtctgcagtgtcagttggggcaattccg
gggccaccaggacttccagggagaacaggagtaccgggagcgccaggtttccagggaata
cctgggccacagggagactcgggatctcgtggacctgatgggcttccgggccctgcaggg
cttccagggtcgaagggtcaaggaggcataggtattccaggaccagctggaccaaagggg
agacaaggccctccaggcccacctggaccaccaggtcgcatcagggagtttttcactgag
agtctcgtgttaaagggagcaaaaggagacacaggggataccggagaaaaaggttgcaaa
ggtcctcaaggagaccctggtgatggctaccacacaaaaggagcaaagggagatcgaggt
caagtgggtccagagggaaagctggggaaggatggtgaacctggaccagcaggatttatg
ggaaggcctggtcccagaggtgcgccaggatatccaggggaaacgggagggacgggtgct
aagggcgatcgaggtcaacctggtcaacctggggaaacaaagatagtgggaaccgtggat
agcctgctgaaaggatacatgggagaaccaggtgatccaggccaacctggacgtactgga
cgccaaggcaatgtgggatttcctggacctgatggactgccagggggttcatctgatcga
caagggccaccaggtcctgatggttctccgggtcccaagggagatcctggtgacccgggt
gataattatccaggcccttctggtgcagaaggagatcctggtgaaccaggacttcaaggt
gatgaaggtccacctggactacctgaagacgaaggtgaaaagacaattgtcaaagggctg
ccgggactgaagggtgtcaagggtatgcccgggccaggaggatacgacgggatgtatgga
atgaaaggggagaagggcgagccctgcgttgattgtgtgaaggaaggtgtaccaggccca
ccaggtcggcaagggccgcaaggattaccaggatttaatcaaggaccaggagctaaaggt
gactcaggtttcccaggaagtccgggcttgcctggaagtccgggttctattggtatacca
ggtgtaccaggcttccctggacaaaagggagagccgttttatgacttcagaccaggagaa
aaaggggagaaaggagacacgggacatattggcaggcctggaaacgatggccaccctggg
tctccaggacggcgaggtctcaaaggtgtccagggccctccaggggattcgtttagtaga
gagggagcaaaaggttttccaggtccaccagggcttacggggagaccaggaccacaagga
taccctggagcagaggggtatgggcctgctggacctcgaggaaccaagggcaatttgggg
gtacctgggttcccagggtcacctggatttccaggccagaaaggagagccaggcttcatt
cacgcaaaaggcctgcctggaccacctgggtttaaaggtcaagaaggattaccaggaagg
ccaggtgttccaggcactccaggtttcataggcaggcctggcttcccaggacagaaaggg
gaaagagcagatgacgcatatcctggaccaccagggtttccaggagagaaaggtgacaag
gggttgccaggaaacccaggtctcccgagtatcggccctcctggtctgccaggtcgacaa
ggccttcctggtcttccaggagtgaagggcgatggtggttatggactgccaggaccgagc
ggcccaccaggccttcctggaaatgatggtgctcaagggcctggaggagatcctggacta
cctggctcaccagggaatccgggattacgaggaaatccagggtcatcgggagaaaaagga
aataaaggagaaattggcccagggggaccaaaaggtagtaaaggctcatgtgagcctctt
cctggaccagcggggccaccaggactagatggcaatccaggactgccaggcccggatggg
ctgccaggtgaaaagggaaacagaggattccctgggtttggtaaacctggccctccaggt
gaaccgggtcatcccgggccaacggtaccaggtcctccaggggtgactggactcaaagga
gttaagggacaaaatggcctaccgggccaaatgggagtgagaggagatcctggaccagat
ggattaccaggatacggaccacaaggattgcctggaattataggacaaccagggcaaatt
ggtgaccctggtcgagctggaaacaaaggttcctcgggccctccaggaatgactggggac
ccaggacccaggggtcccccgggagctccgtctccacaacctatagaacgtactggcccc
ccaggagaccctggcccaccaggtgaacgtggagcagttggtccctggggagatactgga
agtattggaacaaaaggaccaaggggaaatactggagcaccagggaggcctgggggaaga
ggtccaccaggtgacccaggtattccagcattcttgaaaggagtacctggaccccccggg
gtaccaggagatccaggcctccaaggcaatcctggattaaagggactaaaaggagatcag
ggagtctctggagagcctggcacaattggggctccaggtccaagggggtacaaaggagaa
cagggagaaccaaactatgaggcgtacggcccacctggaccgatgggacaaaagggggaa
ccaggattaagcaacacacacacaatgaagggtgcaaaaggacagcctggtactgttgga
gaacatggtttaccaggatttaatggactcaaaggggaaccaggacccaaaggacaaaat
ggttcacctggatatcaaggaccaagaggttcagatggacctcagggaagcaaaggacgg
cgaggacccaatggaccaccaggtacccaaggcccaccaggtggttttgggcctcaaggt
cccaaaggcaatcagggacaggatggcatccccggaccaccaggagagaaaggagataca
attgtgatcgagggaccacctggttcacgtggtgacccaggtcagccaggtctttctggc
aatcttggtttgcctggcccacctggtccagcaattcccggattaagaggagacagagga
cctcctggatcatatggggtctcaggccccagaggaccaccgggaggagatggggcatgt
taccccggggctaaaggagaccgtggagtcgatggccatgcgggtaggccaggttatcct
ggtccacctggacctccaggccctcctggacctggactgaaagggaacagaggagaacca
ggcccgacagggagaccaggttacacaggaccgctaggagagccaggcaatcctggtcca
cctggtccaagaggcacacctggaaatccaggaccaagaggtgactctggtcccactgga
aacaatgggtacccaggtgacaagggagaccacggaaatttacccggcccacctggtcca
cctgggtctaagggttttccaggacaacctggcatcaaaggtaaaccaggatatggtagg
gtaatatatgaatcaggacccccaggcttacatggttctcctggctaccctgggccccct
gggaacactggaccagtgggaccaccaggccaaacaggtctcccgggtattaaaggagtc
caaggttccagcccggtggggccacctggatttactgggcacaagggagacaaaggagca
tcaggtttgccaggtcaaccgggaggctatggagatccaggcaacaagggccaaaaggga
gtacaaggggaaagtggctatggctatgtgaccagtttcctgattgcgcgacatagtcag
agtactcaggtgcctaggtgccctgaaggcaccacccttatttacgttggctactctttc
ctctttatcaacggaaatgaacgagctcatggtcaagaccttggcacctcaggaagctgt
ctgcctcgattctcccccatgcccttcctcttttgcgacacggagacaaactgccgctac
gcttctcgtaacgactactcctactggctgtccactgatgcgcccatgcttccctccatg
gttgccttgacaggagagcagctctcctcccacatcagcaggtgcgccgtgtgtgaaact
acctcgaatgttatagcggtccacagtcagacaactctgctaccggaatgtcccagaggc
tgggattccctctggagtggctattcatttgtcatgcaaacaggtgctggtgcagaaggc
tcttcccaacctctagtgtctcctggctcgtgccttgaacatttccgccaagtgccattc
atagagtgtcacggcagggggacgtgcaactactaccctgattcgtacagctactggctg
gcatccgtacaccctgacatgtttagtaaacccattccccagacggtgaaaggaccttca
cgagaaaacataattggtcgctgtcgggtttgccgcaagtag
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