Syngnathus scovelli (Gulf pipefish): 125985492
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Entry
125985492 CDS
T08785
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04382
Cornified envelope formation
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04518
Integrin signaling
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125985492
04518 Integrin signaling
125985492
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125985492
09142 Cell motility
04820 Cytoskeleton in muscle cells
125985492
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125985492
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125985492
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125985492
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125985492
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125985492
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125985492
NCBI-ProteinID:
XP_049604356
LinkDB
All DBs
Position
17:complement(2482395..2500965)
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AA seq
1677 aa
AA seq
DB search
MQHSKMSSSCAALTWCALRWLLVLLVIAQHLNAGNVEGPCDGRDCSVCQCLPAKGARGPP
GKSGKQGPRGQMGSWGSVGPPGEKGRLGSPGSPGPEGLKGARGNTGPPGFPGHEGSLGHP
GAGGEPGLPGVDGCAGAPGQPGVPGFPGLDGLHGPPGFPGPKGVKGEPLYTDSIPGLPGD
PGRQGDAGLPGQNGVAGPKGYTGAHGPPGDQGSRGYKGLRGPAGDPGRPQPGAAGDDGEQ
GPPGPQGPEEIIEPTPGYLAPKGYKGDRGRPGPCGPKGKKGGQGDFFSQGMKGEEGILGF
PGLRGFQGSPGISGPVGPEGLPGERGLPGLIGTPGPKGDHGDRGFPGPTTYLKGSPLRGA
KGEKGYPGNPGLEGDPGLMGTRGPPGPKGLTYTDGLSVPGPSGPPGPKGFKGEPGGLINP
VPGPKGRKGIRGRKGVIGVRGPPGCGGYICEPGHPGDPGDNGPRGPPGIKGFKGLKGCEG
ACNCTFSHGPPGPPGQPGFPGPPGLPGTPGMKGDPGLKGEEGPAGPHGFKGYLGLKGLKG
QKGDGFITTDKGAKGNQGDTGYPGSPGQLGKPGIDGLPGLPGIPGPPGSSYRGKPGPKGD
PGTGGPKGLPGSLGLPGPGFPGPQGPAGLKGDHGYPGSPGIPGRKGPPGDPAVCCHENAT
GSPGVKGEPGSPGFPGEPGRDGIVGPPGHPGRKGMKGDDGGIEGIGPPGPQGINGDHGDP
GSRGKSLDGPPGAPGVPGPSGRKGSPGDVFNTLPGPPGHPGQPGVRGRKGIPGSPGSPGF
TGVQGPPGRPGRKGEQGFDGDRGAPGPPGSRCTIWESTGPPGPPGPPGNPGPRVTGIPGP
KGSQGDNGLPGHGAMGPPGRSGPPGIPGPAGPRGSAGPPGDFGNDGWPGHKGELGLPGRD
GAKGLPGPPGPPGPRGKQGERGFDGPLGSRGETGYPGMKGIRGPRGLPGEEKLEILKKGE
PGTPGRRGQPGLPGPTGEKGQRGRQGVPGPDGFPGSQGFKGDAGVPGRHGIPGNPGHPGL
KGFIGPRGYSGNDGDPGEPGSQGQPGLPGVPGFSGAKGEPGESFGHPGSPGPKGAKGEKG
FSVPIGDPGDPGDPGPRGYPGTPGQPGTPGDPGIHGGPGFPGPIGPSGSPGLPGVQGDSG
YVGSLGPPGPTGPSGLPGPPGLSGLDGLRGPRGMKGASGVTIPGHPGPDGYPGAKGSKGL
PGPPGPSYPGPKGLRGPPGDSGPDGSLGEPGYLGRECDKPLPGPVGDPGSEGAPGPQGPA
GPKGEAGSLFFHKGDPGPPGLPGLPGQKGDKGYPGNQGTPSYPGFPGPKGERGLPGSRGF
DGAKGPRGDPGPSGRKGVTGPAGDVGAKGVPGDSFTEPIRKAPDGPPGPPGYPGPIGLPG
APGSPGHNGLKGPKGRTGSQGITGPPGPPGIDGSIGDVGDFGEPGFVGPQGTPGPRGDPG
APGYARTSSSGFLLVLHSQSVQVPQCPDGTSQLWVGYSLAYLEGQEKAHTQDLGQAGSCL
PVFSTMPFSYCNKAACHYSARNDKSYWLSTTAAIPMMPLFGYEIRSHISRCVVCETRLPA
VAFHSQDPSIPQCPPGWRSLWTGFSFLLETGAGDEGGGQSLTSPGSCLKDFRTHPIIECQ
GARGSCHYFANLYSFWLTAIRHTDQFVKPKPGTIKAAGEQRRKASQCQVCLRQYSTF
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgcagcattccaagatgagctcttcatgtgcagctttgacatggtgtgccctcaggtgg
ctccttgtcctgcttgtcattgcacagcatcttaacgcgggaaatgttgaaggtccatgt
gatggcagagactgttctgtatgtcagtgtcttcctgccaaaggtgcacggggacctcca
gggaaatcagggaagcaaggacctcgcgggcaaatgggatcatggggcagtgtggggcca
cctggagagaaaggcaggctgggctcaccgggatcaccaggcccggaaggacttaaagga
gcccggggcaacactgggcctccaggttttcctggtcacgaaggttcattgggtcaccct
ggagcaggcggtgagcccggtttgcctggagtggatggctgtgcgggggctccgggtcaa
cctggtgtccccggttttcctggcctggatggtctgcatgggccacctggatttcccgga
ccaaaaggagttaagggagaacccttatacactgattccattcctggacttcctggagat
cccggtcgacaaggagatgcgggtctacctggccaaaacggggtcgccggaccaaaaggc
tacacaggtgctcatggtccacctggtgatcagggctcaagagggtataaaggtctccga
ggaccagcgggtgaccctggaagaccacagccaggcgcagcaggagatgatggtgaacaa
ggcccacccggtccacaaggaccagaagaaatcattgagccgaccccgggttacctcgca
ccaaaaggttacaagggagaccgaggtcgtcctggaccatgtggaccaaagggcaaaaaa
ggtggtcaaggagacttcttcagtcaaggaatgaaaggagaggaaggaattcttggtttt
cctggacttcggggttttcagggatcacctggaatttcaggaccagtgggacctgagggg
ttgccaggcgaaagggggcttccgggtcttatcggaacacctggaccaaagggcgaccat
ggagatcgggggtttcctggtcctacgacgtatttgaaagggtctcctcttcgaggagca
aaaggggaaaagggatatcctggaaatcctggattagagggtgatcccggattaatgggc
acacgtggccctcctggcccaaaaggactaacgtatacagatgggctgagtgtgcctggt
ccaagcggacccccgggtcctaagggctttaaaggagagccaggtggcttaatcaatcca
gtcccaggaccaaaaggaagaaaaggaatacgcgggcgtaaaggtgttatcggagttcgc
ggtcctccaggatgtgggggctacatttgtgagcctggtcacccaggtgaccctggtgat
aatggaccccgaggacctcctggaataaaaggcttcaaaggacttaagggctgtgaaggg
gcttgtaattgtacgttttctcatggaccgcctggtccccctggtcagcctggttttcca
ggacctccaggattaccaggaactccagggatgaagggggacccaggactaaaaggagaa
gagggtcctgctggacctcatggttttaaaggatacctaggtttaaaagggctaaagggc
caaaagggggatggctttatcacaacagataaaggtgcaaagggaaaccaaggagacact
ggatatcctggttctcctggccaactgggtaaaccaggaatcgatggtcttcctgggctg
ccaggaatccctggaccaccaggttccagttacagaggtaaacctggtcccaaaggagac
ccagggacaggtggtcccaaaggtttgccaggcagtctggggctcccaggtcctggtttt
ccaggtccccagggtccagcaggactgaaaggtgatcacgggtacccgggctccccagga
attcccggtcgaaagggcccgccaggcgaccctgcagtctgttgtcatgagaatgcgacg
ggatcacctggtgttaagggagaacctggttccccaggctttccaggtgaacccggaagg
gacggaattgtaggacccccgggacatccaggacggaaaggcatgaaaggagatgatggt
ggaattgaagggattggacctccagggccacaaggtataaatggagatcatggtgaccct
ggtagtcgtgggaaaagcctcgatggtcccccaggcgctcccggagtaccgggaccatca
gggaggaaagggtcccctggagatgtgttcaatactttgccaggtcctcctggtcatcca
ggccaacctggagttagagggagaaaggggattcctggcagtccaggaagcccagggttt
acaggtgtacaagggccacctggaaggccaggtcgaaaaggagaacaaggatttgatggt
gatcgtggagctcccggacctccaggctcgcgatgtacaatatgggagtcaacaggacct
cctggaccacctggtcctccaggaaaccctggaccaagagtgacaggtatccctggtcca
aaaggctcacagggagataatggcctaccgggtcatggcgccatgggtccaccgggtcgc
agtggtcctcctggtataccgggcccagcagggccgagaggctctgctggtcctccggga
gattttgggaatgacggttggccaggacacaaaggtgagttgggcttacctggcagggat
ggggccaaaggcttaccaggcccgccgggacctccaggtccaagaggcaagcagggggaa
agaggctttgatggtccactaggtagccgaggagaaacaggatatcctggtatgaaagga
atacgtggtcccagaggattacccggggaagaaaaacttgagattttaaaaaagggagaa
ccaggaactccaggaagaagagggcagccaggtctaccaggaccaacaggtgaaaagggg
caaagagggaggcaaggcgttccaggaccagatggcttccctggttcacaaggatttaaa
ggtgatgctggtgtacctggaagacatgggatacctggaaatcctgggcaccctggattg
aaaggttttattggaccaaggggatacagtgggaatgatggagatccgggagaaccagga
tcacagggacaaccaggacttccaggggttccaggattttcaggtgccaaaggtgaaccc
ggagagtcttttggacatcccggaagccccggacccaaaggagctaaaggggagaaggga
ttcagtgtaccgattggagatccaggggatccaggggatccaggtccaaggggatatccg
ggaacgcctggacagccgggcactcctggtgatccgggaatacatggtggaccaggtttt
cctgggcctattggtccatcgggtagtccgggtcttccgggtgttcaaggtgatagtggg
tatgtggggtctttgggtccaccaggcccaactggaccctcaggactgcccggtccgccc
ggtctttctggactggatggcctaaggggaccgagagggatgaaaggagcaagtggagta
actatcccaggtcatcctggaccagatggatatcctggagctaagggttccaagggactg
ccggggcctccaggaccctcttatcccgggccaaaaggcctgaggggtccgccaggtgac
tcaggtccagacggttctctaggtgaacctggttatcttgggagagaatgtgacaaacct
ttgccgggacctgtcggagatccaggatctgaaggggctcccggcccgcaagggcctgct
ggaccgaaaggtgaagcaggcagcctctttttccacaagggggatccggggccacccggc
ctacctgggcttccaggccagaaaggagacaagggctatccaggaaatcaaggaactccg
tcatatccaggctttccaggaccaaagggtgagagaggccttcccggttccagaggtttt
gatggagcgaaaggaccgagaggtgatcctgggccttcggggaggaaaggagtaactggc
ccagctggagatgttggtgctaagggtgtccctggtgattcttttactgaacccatacgg
aaggctccagacggccctcctgggccacctggttacccaggacccattgggttgccaggc
gctccgggttcacccgggcataacggactaaaaggaccaaagggtcgaactggttctcag
ggcatcactggacccccaggtcctcctggtattgacggttctattggtgatgtaggagat
tttggtgaaccaggatttgttgggcctcaaggcaccccaggtccacgtggtgacccaggc
gcaccaggttatgcgaggacatcaagctcaggctttctgttggttcttcatagccaatcg
gtacaagtgcctcaatgccctgatggcaccagtcagctttgggtgggctacagtctggcc
tacctggagggacaggagaaggctcacactcaagaccttggtcaagctggctcttgcttg
cccgtcttttccaccatgccgttctcctactgcaacaaagctgcctgccactactcggct
cggaacgacaagtcctactggctctccaccacggcggctatacccatgatgccgctcttt
ggctatgagatcagatcccacatcagccgctgtgtggtgtgcgagacacgtttgccagct
gtggcttttcatagtcaggatccatcaattccacaatgcccacctggctggaggagcctt
tggacgggcttttcctttctccttgaaacaggggcaggtgacgagggtggcggtcagtcc
ctgacatcccccggcagctgcctcaaggacttccgaacccacccgatcatcgagtgccag
ggcgcgcgaggttcttgtcactactttgccaacctctacagcttctggctgaccgccata
cgccacactgatcagtttgtcaagcccaagcccgggaccatcaaagctgccggggagcag
cgacgcaaggccagtcaatgtcaagtctgcctcagacagtacagcacattttga
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