Syngnathus scovelli (Gulf pipefish): 125985505
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Entry
125985505 CDS
T08785
Symbol
rnf2
Name
(RefSeq) E3 ubiquitin-protein ligase RING2
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125985505 (rnf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125985505 (rnf2)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125985505 (rnf2)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125985505 (rnf2)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125985505 (rnf2)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
125985505 (rnf2)
Noncanonical PRC1 (PRC1.1)
125985505 (rnf2)
Noncanonical PRC1 (PRC1.3/1.5)
125985505 (rnf2)
Noncanonical PRC1 (PRC1.6)
125985505 (rnf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAWUL
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
RING_XB3-XBAT31
zf-Nse
zf-RING_5
zf-RING_4
zf-rbx1
zf-RING_6
zf-UDP
TRAF3_RING
zf-C3HC4_5
CAMSAP_CC1
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
125985505
NCBI-ProteinID:
XP_049604373
LinkDB
All DBs
Position
17:11145018..11149112
Genome browser
AA seq
342 aa
AA seq
DB search
MTQAVQTNGVQPLSKTWELSLYELQRTPQEAITDGLEIAVSPRSLHSELMCPICLDMLKN
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
EAHQERVLARISKHNNQQALSHSIEEGLKIQAMTRLQRGKRQTVENGSGAEDNGDSSHCS
NASVHSNQEAGPSIKRTKTSDDSGLDMDNAAENGGGDSVIDSGASEIELVFRPHPTLMEK
DDGHNSVEFVPRYIKTSGNATVDHLSKYLAVRLALEELRRNTEASPVNVEAASEKQYTIY
IPTAGNQFTVLNGSFSLELVSEKYWKVNKPMELYFAPTKEHK
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgactcaagccgttcagaccaatggtgtccaacccctcagtaaaacctgggagttgagc
ctttatgaattacaaagaaccccacaggaagcaattactgatgggttggagattgctgtg
tcacccaggtcattgcacagtgagctcatgtgtcctatctgtctggatatgctgaagaac
acaatgacaaccaaagaatgcctgcaccgtttttgtgctgattgcattatcacagctttg
cgatctggcaacaaagaatgtcctacatgtcgcaagaaattggtttccaagaggtcgctg
cgtccagaccctaattttgatgccctgataagtaaaatttaccccagccgggatgagtat
gaagcacaccaagaaagagtgttggctcgcatcagcaaacataacaaccagcaagcactt
tctcacagcatagaggaaggactaaagatacaggctatgaccagactgcaacgtggtaaa
agacaaacggtggagaatggtagtggagctgaagataatggtgactcttcacactgcagt
aatgcctctgtccacagcaatcaggaggctggtccgagcataaaacgcaccaagacaagt
gatgacagtggacttgacatggacaatgctgctgagaatggaggaggtgactctgtgatt
gacagcggtgccagtgaaattgaattggtattcaggcctcatcccacactcatggaaaag
gatgatggtcacaacagtgtggaatttgtgcctcgctacataaagacatctggaaatgca
acagtggatcacctgtctaaatacctggctgtccgtctggctttggaggagcttcgaaga
aatacagaggcaagtcctgttaatgtggaggcagcttcagagaagcagtacactatctac
atacctactgctggaaaccaattcacagttctgaatggttctttctctttggagctggtc
agtgaaaaatactggaaggtgaacaaaccaatggaactatactttgccccgactaaagaa
cacaagtaa
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