Syngnathus scovelli (Gulf pipefish): 125985601
Help
Entry
125985601 CDS
T08785
Symbol
si:ch73-233f7.1
Name
(RefSeq) putative protocadherin beta-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125985601 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Protocadherins
125985601 (si:ch73-233f7.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
125985601
NCBI-ProteinID:
XP_049604496
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MDQRLSRCSWVPMTGLVISLLLCACVVDLVLAQIRYSIPEELEHGAFVGNIAEDLGLDVA
KLSARRFRIVSGAKKQYLEVNLENGILFVNEKIDREELCERSPSCFLHLQVVIENPLELY
RVEVEILDVNDNSPSFPWSEFNIDITESAAPGSCFPLESAQDLDVGTNSLRSYQLGANEH
FILNIQTRNDGSKFAELVLDNPLDRERQKKHEMVLTAFDGGSPERSGTALITITVLDAND
NVPVFDRSVYRARLVENAPRGTLVLKLNATDLDEGSNGEVTYAFSGHAPLKVRELFSVDP
YTGEIRVKGVVDYEKANVYELYVQARDRGPSAVAVHSKVLIDIVDVNDNTPEVILTSVST
PVQEDAPPGTVIAVISVMDRDSGENGNVDCQIPNNVPFQLHSSFKNYYTLVTSEVLDREV
VSEYNITLTARDLGSPSLSTRKTIVVQVSDINDNPPRFSQPSYTVYVTENNAPGASICTV
TAFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFHILVQA
QDAGFPPLANNVTVNVFVLDQNDNAPIIVSPLPKNGTVATEVVPRSVDAGYLVTKVTALD
ADAGQNSRLSYQVMQATDPGLFSVALYTGEIRSIRRLVDKDASRHRLVILVKDNGQPPLS
ATVSVVLTVVDGIPESLSDHGDLTLSPQPPSNLALYLIVSLSTISFIFLVAIIVLAAVKC
YKDRETLSGYNLPPFACCCCGGFQPEPPPEVFKKSNLNLQISSTANKVPTNCMEVNGSSS
LTQPYCYKVCLSPESSKSDFMFLKPCSPTSTPRNNEAKSAEHSWGASVNNGATTPNELKQ
PNTDWTLTKNQNSSIKSYNSINMDGTLMRKAMHADPENYVTSMAPGQYWTWGTHMRGTKG
TTRQPEHYKMSPSPSGVTSRPWTPRCTPPPQQQQPTNPPHPHPHPHPPPDYHHNVYIPGT
PSGFCTLRPVAQRSDLDVHNSFSTFGKKRRLQMSPQGEAAMINNDLYND
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaggctctccagatgcagctgggtgccgatgacagggcttgttatctctctg
cttctgtgcgcctgtgtggtggacttggtgctggctcaaattcgctactccatccccgag
gagctggagcacggagccttcgtaggcaacattgcggaggacctgggcttggatgtggcc
aagttgtccgcgcgtcgcttccgaatcgtgtcaggggccaagaagcaatatttagaggtg
aacttggagaacggaattttgtttgtgaatgaaaaaatagacagagaggagctttgtgag
cgcagccccagctgttttttacatctgcaagttgtcatcgaaaatcctttagaactctac
agagtggaagtggagattttagacgtgaatgacaactcccccagtttcccttggagcgaa
tttaacatagacattacggagtcggctgcgcccggctcctgctttccgttagagagcgcg
caagacttggacgtgggcactaattctctgcgctcctaccaacttggcgcaaacgaacac
ttcattctcaacatccagacgcgcaacgacggaagcaagtttgcggagctggtgctggac
aaccctttggatcgggagcggcagaaaaagcacgagatggttctgacagcttttgacggg
gggtcacccgaacgctccggaaccgctttgatcaccatcacggtgctcgacgcgaacgac
aacgtccccgtgttcgaccgctccgtgtaccgggcacgactagtggaaaatgcgccgagg
gggacgctcgtgctgaagctgaacgccaccgatttggacgagggctcgaacggggaggtg
acgtacgcctttagcggacacgcgcctctcaaagtgcgcgagttgttcagcgtggatccg
tacacgggagagatccgcgtaaagggtgttgtggactacgagaaagcgaacgtgtacgag
ctgtacgtgcaagcgagggacaggggaccctcggccgtggccgtacacagcaaagtgctg
atcgacatcgtggatgtgaacgacaacacccccgaagtaatcctcacgtccgtgtccacg
cccgtgcaggaggacgcaccgccgggcaccgttatcgccgttatcagtgtcatggatcgg
gactcgggggaaaacggcaacgtggactgtcaaatccccaacaacgtcccctttcagctg
cactcctcttttaaaaactattacacactggtgacaagtgaggttttggacagggaagtg
gtgtccgagtacaacatcacactcacggcgcgtgatttgggctccccgtcgctttccacg
aggaaaactatcgtggtacaagtatctgacattaatgacaaccccccacgattttcacag
ccgtcctatactgtttatgtgaccgagaataacgccccgggcgcttccatttgcaccgtg
actgccttcgaccccgattccaaccaaaacgcctatctgtcttattctattctcgagggt
caaattcagggcatgcccgtgtccacgtacgtgtccattaactcagataatggcaacatt
tacgcactgcgctcctttgattacgagcaacttcgaaactttcatattctcgtgcaagcg
caggacgcaggttttccaccgctggccaacaacgtgactgttaatgtttttgttttggac
cagaatgacaacgcgccgattattgtgtccccactgcccaaaaacggcaccgttgccacg
gaggtggtgccccgctctgttgatgccggttatctggtcaccaaagtaacagcgctggac
gcagacgcggggcaaaactcgcggctgtcctatcaggtgatgcaagcgacagacccgggg
ctgttcagcgtggcgctgtacacgggagaaattaggagcattcgtcgactggtggacaaa
gacgcttccagacacagactggttatactggtgaaagacaacgggcagcctcctctctcc
gccaccgtctccgttgtcctgacggtggtggacggcatccccgagtccttatccgaccac
ggagacctcacgctcagcccccagcccccctctaacctcgccctctacttgatcgtctca
ctcagtaccatatcttttatcttcctcgtggccatcatcgtcctggctgcggtcaagtgc
tacaaagaccgggagaccctgagtggctacaatctgccccccttcgcgtgctgctgctgc
ggcggctttcagcccgagcctcccccggaggtgttcaaaaaatccaacctcaacctgcag
atttcctccacagcgaataaggtgcccaccaactgcatggaagtgaacggaagcagcagc
ctgacacagccttattgttataaagtgtgcttgagcccagaatcgtccaaaagtgacttc
atgtttttgaagccgtgcagcccgaccagcacgccgcgcaacaacgaggccaagagcgcg
gaacattcgtggggcgcgtctgtcaacaacggagcgaccacccctaatgagctgaagcag
ccaaacacagactggactctcacaaagaaccagaactcctccatcaaaagttacaattcc
attaatatggatggaactctaatgcgtaaggccatgcatgccgacccagaaaactacgtc
acgtccatggctcctggacagtactggacttggggcactcatatgagaggcacaaagggt
acgacaagacaacctgaacactataaaatgtctccatcacccagcggcgttacctcccgg
ccctggactcctcggtgcacccctccgccccagcagcagcaacctaccaaccccccacac
cctcacccacacccgcacccgccgcctgactaccatcacaacgtgtacattcccgggacg
ccatcaggcttttgcaccctgaggcctgtggcacagcgtagcgacttggacgtccataac
tccttctccacctttggcaagaagcggcgcctccagatgtccccccagggagaggctgct
atgatcaataacgatctgtacaatgactga
DBGET
integrated database retrieval system
