Syngnathus scovelli (Gulf pipefish): 125985648
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Entry
125985648 CDS
T08785
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
125985648 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125985648 (sox17)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125985648 (sox17)
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GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
125985648
NCBI-ProteinID:
XP_049604553
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Position
18:complement(5979918..5982392)
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AA seq
362 aa
AA seq
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MSSPDAGYASDDQNQARCAMSVMMPGMRHCQWAAEPLSPLGEPKTKSEAAVAAGGAAAGN
QQPSRGKSEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLPAPDKQP
FVEEAERLRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLLHGASEQRALGDGAGGPAYH
EHAGFPPIPQQHHHQPPLGHYRSDTLGGPSYESYSLPTPDTSPLDAVDTDSMFFPPQEDC
HMMYAYHPQGSDYQHQESLLQHQQQHPASYVGCPNPLTVYYGHAKRHPGAGQLSPPPDCQ
PHAAADNTELLSEVDRSEFEQYLGSSAYGVPHEAGSQGPEGLISSVLSDASTAVYYCSYN
NS
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcgggttacgccagcgacgatcagaaccaggcaaggtgcgcgatg
tcagtaatgatgcctgggatgagacactgccagtgggccgccgagcccctcagccccctc
ggggagcccaaaactaagagcgaggcggcggtggccgctgggggcgcggccgcgggcaac
cagcagccgagtcgcggcaagagcgagcccaggatccgtcgccccatgaatgccttcatg
gtgtgggcgaaagacgagcgcaagcggctggcgcagcagaacccggacctgcacaacgcc
gaactcagcaaaatgctcggcaagtcgtggaagtcgctaccggcgccggacaagcagccg
ttcgtggaggaggcggaacgtctgcgagttcaacacatgcaggaccaccccaactacaag
taccggccccgcaggcgtaagcaggtcaagcggattaagcggctggactcgggcttcctg
ctgcatggagcttctgagcagcgggcgctaggggatggggcaggtgggccggcctaccac
gagcacgccgggttcccgccgatcccgcagcagcatcatcatcagccgcccttgggtcac
taccgctcggacaccctcgggggcccctcctacgagagctacagcctccccacgcccgac
acctcacctctggacgccgtggacaccgactccatgttctttccgccccaggaggactgc
cacatgatgtacgcctaccacccacagggcagcgactaccagcaccaggagtccctcctc
cagcaccagcagcagcaccctgcttcctacgtggggtgccccaaccccttgacggtctac
tacggtcacgccaagcgacacccgggggctgggcagctgtcgccgccgcccgactgccag
ccgcacgccgcggccgacaacactgagctgctctccgaggtggaccgaagtgagtttgag
cagtacctgggctcgtcggcgtacggggtcccgcatgaggccggatcacagggacccgag
ggcctcatatcgtccgtgctgtcggacgccagtaccgccgtctactactgcagctataac
aactcctaa
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