Syngnathus scovelli (Gulf pipefish): 125985781
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Entry
125985781 CDS
T08785
Name
(RefSeq) piezo-type mechanosensitive ion channel component 2 isoform X1
KO
K22128
piezo-type mechanosensitive ion channel component 1/2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125985781
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125985781
Membrane trafficking [BR:
sscv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
125985781
Ion channels [BR:
sscv04040
]
Other channels
Mechanosensitive channel (Piezo)
125985781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piezo_TM1-24
Piezo_TM25-28
Piezo_THU9_anchor
Piezo_cap
THU_Piezo1
FAM210A-B_dom
DUF5753
Motif
Other DBs
NCBI-GeneID:
125985781
NCBI-ProteinID:
XP_049604839
LinkDB
All DBs
Position
18:complement(7487662..7506242)
Genome browser
AA seq
2642 aa
AA seq
DB search
MSRSTSQLLLAGFTFRLLLPLSLSAGALLRFNGFSLLYVFLLLLLPLLPQPCAGSLRAGN
SNRCVTAVCVSSFLFLLLQTFFQISAAALTPDRKCTSWQKALNQLGFVRLTGSDAPSAVR
HVLPDIGVLVVGLLAWRLSLRLGPATHTQESRLYDPEDEASAGSRVAAQVEQVLSKIRKM
LANAMTAGGKLLFTLLLGLTGVVLPSLSSLPYLLSFQVVCTWWAWSGRLPPPLFRCLSLM
SLLYSAAHFLLVYSYQLPSLQEAWPSTQTAASVFGLVPLVSADCDAPWRMQVNPQLSWFH
FVSPLTLVMLYHVVAGLRRNKLLDGEEVPSTDKMDSLEPVSCDASSDVITTEEVIGGEVK
GDIVAESQRELWRTAHEGDVRFGTPTDSLALDSPPESLAPPTQSTILESDTPHCSFSHSD
TLETCAFEGDAAHWGGEDSQAHGGSGVASVASGFLLKQSYVAALMAMMAWSITYVSWLTC
VLLLWSCALWMMRQRRRYTLASSPWLVAYGNLLLVLQYVFSFAAVRQVPGLFPKKDDPCR
ELASKLVCLLTFWLLLRQARMEKTDRHPDGETNSRLSTVTIIHTEAEKKMEEICYEEVLL
MKGGVQMDALLAVLTRMFVKYWIYVCGTMFFFVSFEGKMVLYKVIYMVMFLCCVALYQVA
AAYDDASCFLEKGLVTPCLVLSLQLNYEKWRALLRGFWVGVVVYSMLVLFLVYTFQFPSS
LHTWTYYTGLSTHRLEDLGLEKFSVPVLFTRIFIPTAFLLVCIVHLHYFHEPFLQLTDLK
TVVDTHNSTITRLVHSEGSLVDMSVGGASQLFAEDEEGGVVSGKEDEPEEKWRQEEDEDP
CTFEEESLSEHTEALVSWRLVVDRLSVLFLRLLLSLQRLQSLLWWLLELHIVKIVSSYMI
WISVKEVCVFNLLFVASVAVALPCRAWRPLLAGVCTVWTCMVAICKMMYQLNIVQPITSN
CTMPGNATTNVSTSVLYAAPIDPAQWVGLRKYEGKLLDYLRYNLMMLALLAFEVTVDRHQ
EFHRLRCNQVPPPTKTLFHDISRRHMDQSLLSCAKYFLNYFFYKFGLETCFLLVVNVIGQ
RMDLFAVGHALGLIGVLSRRSRKRISAVWPKYCYFLSGLLCLQYLLCIGLPPAACKDYPW
RPPTSNVDSNVVKWLFLPDHLTPPNPLFLLYDYLLLLGASLQLQVFEDERDVSVQALAGN
NGELDVEDGHVWDLTRGIRPNTVPDFMLSRSYLDMMKVIIFSYMFWFVLTIIFITGTTRI
SIFCMGYLVACFYFLLVGGDLLLKPVGSILLYWDCLIGYNVFVITMKNILSILACGFIKS
LVVNHCWLVQLFSLACTIRGYAKPAQQSSKQCELPSDEAGIIWDGVCFCFLLLQRRVFRS
HYFLYVVLDLQNTQLLASRGAELFEASTVKAVRARLEVEKMSMDLLKRQMERIKCRQQKF
RRGKEKMLNLTQKSSRSDAQEKMKGRAQEDWWRPWVNHASMVRSGDYFLFESDSQEDEDE
KKDEEKEEEGPDKSALQFVYHAWITDSRTALRARHSQKKVKKQKPEQKMAPSEREETSDC
ATTEVMEDSEEDVEKDKEEGADTVLRRASNVLRFCWVLLSALLDSLTSWLGGLCREHVDI
STVLRMERCMLTQQAKQGQVPSREAIHVYYQQQMMQSSRESGINLSVPEEEAVIDEKRIK
DKDESPAAGSGPAFASGDETKADASEIQTREDCPECFIAMTSQSHRAKLTRMKRVTSSSD
EEDYRAASPSSQLSPPSYSHALAEDIQEPESEQDESKRRMKARLRRQLLLHKTDVPSGCT
STSCLLTSRPQELTASELLKNRTFHSVELEASDEFYRNQPQLLQLCYAFYNILAARSETV
CYLVIVLNHMVSASCLTLVLPVLVFLWATLSVPRPSKTFWMTAIIYTEVTIVIKYFFQFG
FFPFNQKLEVDRSKPFHPPNILGVEKKEGYVLYDLLQLLALFYHRAILKCHGLWDQSIST
DTKCQQDDQAELSSTPTDMVYWGGERQACSSSTGLCSPTGSMSSIEQLGKLELLLRKLGE
LSIRSKQYCVSKCESLSSPVCQFFRALVQPEYSAVTDVYVLMFLADTIDFIIIVFGFWAF
GKHSAAADITSSLSEDQVPEAFLVMVLIQFGTMVIDRALYLRKTVLGKLVFQVILVLGIH
FWMFFILPTVTERRFNHNLVAQLWYFVKCIYFGLSAYQIRSGYPTRVLGNFLTKSYNYLN
LFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDVYAHCFVLKCWRESEKRYPQP
RGQKKKRVVKYGMGGLIVLLLICIVWFPLLFMSLVKSVAGVVNQPLDISLTITLGGFQPI
FTMSAQQNQLKDLTEEDFRAFVRSYSYIPTALQFLEAYSHEDVTVAELQGSSNSLWTISP
PSRRYLSQVLNLDHFPLTLSWTIQRNLSLGAKAELASGKHVSYLNDQTRLELIQLLNGTR
TLPVVIDAVLPSFLRAPSDSNAKPIEQLYTDGCYKDILLSLERTVNESQEIQEWWIVDQP
ASSLVHLGGATSTDNSREAGLQIFVFSDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVRE
FFSGISHSIMFEELPCVDRILKLCTDIFLVRETGELELEEELYAKLIFLYRSPETLIKWT
RR
NT seq
7929 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgttcgacctcccaactgctgctggcgggtttcaccttcaggctgctgctgccg
ctcagcctcagcgcaggggctttgctgcgtttcaacggcttctcgctgctctacgtcttc
ctgctgctcctgctgcccctgctgccccaaccctgcgctggatccctgcgtgcaggcaac
agcaatcgctgcgtcacggcggtttgtgtgtccagtttcctcttcctgctgctgcagacc
ttcttccagatctccgctgccgccctcacccctgaccgcaagtgtacctcctggcagaag
gcgctgaatcagctgggcttcgtgaggctgacaggaagcgatgcaccatccgccgtgcga
cacgtcctcccggatatcggtgtgctggtggttggcctgctggcatggaggctgagcctg
agactcggccctgcgacacacacccaggaatcgcggctttacgacccagaggacgaggca
agcgccggcagcagggtggcagcacaagtggaacaagtgttgagcaaaatcaggaagatg
ctggcaaatgccatgaccgctggaggcaagcttctcttcacgcttttgctgggactcaca
ggtgtggtgctgccatcactctcctccctgccctacttactttcttttcaggtggtgtgc
acttggtgggcttggagcggtcggctccccccgccgctcttcaggtgtctctctctgatg
tcgctcttgtattccgccgcccacttcctgctcgtctacagctaccagctgccttcgctg
caggaggcgtggccttccacccagaccgccgcaagcgtgttcggcctggtccctctggtg
tcggcggactgcgatgctccctggaggatgcaggtgaacccgcagctcagctggtttcac
tttgtcagcccgctgacgctcgtgatgctctaccacgtcgtcgctggcctgcggaggaac
aagctgctggatggcgaagaggttccgagcacagacaaaatggactctttggagcccgtc
agctgtgacgctagcagtgacgttatcaccactgaggaggtcatcggcggtgaggtcaaa
ggtgacatcgtggccgagagccaacgagagttgtggagaacagctcatgaaggagatgtg
cgttttgggacgccaaccgattctttggccctggatagtccgcctgagtctttggccccg
cccacacagagcacaatcctggagtctgacacgcctcactgctccttcagccattcagat
acgttggagacgtgcgctttcgaaggcgacgcggcccattggggcggtgaggactcgcag
gcgcacggcggatccggtgtggcctccgtggcgtccggcttcctcctgaagcagagttac
gtggccgcactgatggccatgatggcctggtccatcacgtacgtgtcgtggctgacctgc
gtgctgctgctgtggtcatgcgctctgtggatgatgcgccagcggcggcgctacacactg
gcgtcctcgccgtggttggtggcctacggtaacctgctgctcgtcctgcagtacgtcttc
agctttgcagccgtccgtcaggtgccgggactctttcccaaaaaggacgatccctgccgg
gagctggcgtcaaagctcgtgtgtctgctgaccttctggctgctgctacgtcaggctcgt
atggagaagacagaccgacaccctgacggagagacaaactcccggctgtccactgtcacc
atcatccacacggaagctgaaaagaagatggaagagatttgctacgaggaggtccttttg
atgaaaggaggggttcagatggacgctctgcttgcagtactcaccaggatgtttgtcaaa
tactggatctacgtctgcggcacaatgttcttttttgtcagttttgaaggcaaaatggtc
ctgtacaaggtcatctacatggtgatgttcctgtgctgtgtagctctctaccaggtagcg
gccgcttacgatgacgccagttgcttcttggagaaggggctggtgactccgtgccttgtc
ctgtctttgcagttgaactacgaaaagtggcgggccttattacgaggcttttgggtcggt
gtggtagtttactccatgttggtcctctttttggtctacacattccagttcccctcgtcc
ctccacacctggacctactacactggactaagcactcacaggttggaggatctgggtttg
gagaagttctcagtcccagtcctcttcacaaggatcttcatccccacagcttttctgctg
gtgtgtattgttcacctgcactactttcacgagcccttcctccagctgacagatctcaaa
actgtagtggacacgcacaacagcaccatcacaaggttggtccactctgagggcagcctt
gtggacatgtcggtgggaggcgcttcgcagctctttgcggaggatgaagaagggggcgtg
gtctcaggaaaagaggacgagccagaggaaaagtggagacaagaagaagatgaggacccc
tgcacgtttgaggaggagagcctgtcagagcacacggaagcgttggtgtcgtggagattg
gtggtggaccgtctctcggttttgttcctgcgcctcctcctgtctttgcagcgcctgcag
agcctcctctggtggctactggaacttcacattgtgaaaattgtctcctcctacatgatc
tggatctcagtcaaggaggtgtgtgtgttcaatctgctgtttgtggcgtctgtggctgtg
gctttgccttgcagagcctggcgccccctgctggctggggtgtgcaccgtgtggacgtgc
atggtggctatctgtaagatgatgtaccagctcaacattgtccagcccatcacatccaac
tgcaccatgccaggtaacgccacgaccaacgtgtctacctcagtcttgtacgctgctccg
attgaccccgcccagtgggtgggtcttcgcaaatatgagggaaaactgctggactacttg
aggtacaacctgatgatgttggcgctcttggccttcgaggtgacggttgacagacaccag
gaattccaccgtctgcgctgcaaccaagtcccacctccaaccaaaactttgttccatgac
atcagcaggcgtcacatggatcaaagcctgctgagctgcgccaaatattttctcaattac
ttcttttacaagttcggtctggagacttgctttctgttagtggtcaacgtgattggtcag
cggatggatctgttcgccgttggccacgccttggggctcatcggcgtcctatcaaggcgt
agcaggaagcgaatcagtgcagtgtggccaaagtactgctacttcctctccgggctcttg
tgtctccagtatctcttgtgtatcgggttgccgcctgctgcctgcaaagattatccatgg
cggccgcccacatccaacgtggactccaacgtagtgaaatggcttttcctgccagatcac
ctgactcccccaaaccccctcttccttctatacgactatctgctcctgctgggcgcctcg
ttacagcttcaagtgttcgaggacgagcgtgacgtcagcgtccaggcgctggccggcaac
aacggcgagctggatgtcgaagatggccacgtctgggatctgacccgggggattcgtccc
aacaccgtccccgacttcatgctgtccaggtcttacctggatatgatgaaggtcatcatt
ttcagctacatgttctggtttgtcctcaccatcatcttcatcacaggaaccaccaggatc
agcatcttctgcatgggctacctagtggcgtgtttctattttctcttggtgggcggagac
ctgctgcttaaacccgtcggctccatcctgctatattgggactgtctgatcggctacaac
gtctttgtgatcaccatgaagaacatcctttctatcttggcgtgtggtttcatcaagtcg
ctggttgtcaaccactgctggttggtccagctcttcagcctggcctgcaccatccgaggc
tacgctaagccggcacagcagagcagcaaacaatgcgaactccccagcgacgaggcggga
atcatctgggacggcgtgtgcttctgcttcctattgctgcaacggagggtcttccggagt
cactacttcctctacgtggtgctggacctgcaaaacacgcaactgctggcctccaggggg
gcggagctctttgaggcatctaccgtgaaagcagtgcgtgccagactggaggtggagaag
atgtccatggacctactgaagagacagatggagaggattaaatgtcgccagcagaagttc
cgaagaggaaaagagaaaatgctcaatttgactcaaaagagctcccgtagtgacgctcag
gaaaagatgaaggggcgagcacaggaggattggtggaggccgtgggtcaaccatgcctcc
atggtgaggagcggagactacttcctgtttgagagcgacagccaggaagatgaagatgaa
aaaaaggatgaagagaaggaggaggagggtcctgacaaatctgcccttcagtttgtgtat
cacgcctggataacggactccagaacggccctgcgagctcgtcacagccagaagaaagtg
aagaaacagaagcccgagcagaagatggcgccaagcgaaagagaggagacgtcagattgc
gccactactgaagtgatggaggactcggaggaggacgtggagaaggacaaggaggaggga
gcggatacggtcctgcgtcgggcctccaacgttcttcgcttctgctgggttctgttgtcg
gctctgctggactcactgacctcttggctgggtggtttgtgtcgcgaacacgtggacatc
tccaccgtgctgcgcatggagcgctgcatgctgacccagcaggccaagcagggtcaggtg
ccgtccagagaggccatccatgtgtactaccagcaacagatgatgcagagttccagagaa
tcaggaatcaacctgagtgttcctgaggaagaagcagttatagatgaaaaaagaattaag
gacaaagacgagagtccggcagcgggaagtggacctgcattcgcctctggagatgaaaca
aaagctgatgcctctgagatccagactagagaagactgcccagagtgcttcatagctatg
accagtcaatcacaccgagccaaactaaccaggatgaagagagtcacatcatcctcagat
gaggaggactacagggctgcctcgccctcctctcagttgtccccaccttcctacagccat
gctctggctgaggacatccaagagccggagagtgagcaggacgaatccaaaagaagaatg
aaggcaagattaaggaggcagctcttacttcacaagactgacgtcccatctggatgtacc
tccacttcttgtctcttgacatctcgtcctcaggagctgacagcgagtgagcttctgaag
aacaggactttccacagcgtagaactggaggcgtctgatgagttctatcgcaaccaaccc
cagcttctccagctatgctacgccttttacaacattctcgctgccagatccgagacggtc
tgctacctggttatcgtcttgaaccacatggtgtctgccagctgtctcacactggtactt
cctgttctggtgtttctgtgggcaactctgtctgtacctcgacccagtaagaccttctgg
atgaccgccatcatctacactgaggttaccatcgtgatcaagtattttttccagtttggg
ttctttcccttcaaccaaaaactagaagtggaccgctcaaaacccttccacccgcccaac
atactaggggtggagaagaaggaaggctacgttctgtatgacctcctgcaactgcttgct
ctattttaccacagagccatactgaagtgccatggactttgggaccagagtatctccacc
gacaccaagtgtcagcaagatgaccaggcagaattaagttcaactcccacagatatggtg
tactggggtggtgagagacaggcctgctctagctccaccggactatgttctcctacaggc
agtatgagctccatagaacagctcggcaagttggaactgctgctgaggaaacttggggaa
ctttccatccggagcaagcaatactgtgttagcaagtgcgagtccctttccagtccagtc
tgtcagttcttccgagctctggtccagccagagtacagcgccgtgaccgacgtttacgtc
ctcatgttcctggcagatacaatcgacttcatcatcatcgtctttggcttctgggctttt
gggaaacactcggcagccgccgacatcacttcctccctttcagaggaccaagttcccgaa
gcattcttagtgatggttctgatccagttcggtaccatggtgattgatcgagctctgtat
ttaaggaagaccgtgttgggaaagttggtctttcaggtgattttggtgttggggatccac
ttctggatgttcttcatcctgccgactgtcacagagagacgcttcaatcacaacttggtg
gctcagctgtggtatttcgtcaaatgtatttacttcggcttgtcagcgtaccagattcgc
tcaggttatccgacgcgggtcctgggaaacttcctgacaaagagctacaattatctcaac
ctgttcctgttccaaggtttccgactggttcctttcctgactgagctgcgagctgtgatg
gactgggtgtggaccgacaccaccttgtctctgtcctcctggatctgcgttgaggatgtc
tatgcccattgctttgtcttaaagtgctggagagagtctgagaagcgataccctcagcct
cgtggtcagaagaagaaacgagtggtgaaatacgggatgggaggtttgatcgtgctgctg
ctgatttgcatcgtgtggtttcctctgctcttcatgtccctcgtcaagtcggtggctggt
gtcgtcaaccagccgctggacatctctctgaccatcactctgggaggcttccagccaatt
ttcacaatgagtgcacagcagaatcagctgaaagacctaacagaggaagacttcagagcc
tttgttcgttcctacagttacattccgaccgctttgcagtttctcgaagcatacagtcac
gaagatgtgactgtggccgagctgcagggtagcagtaactctctatggaccatcagtcca
ccaagcaggcgatacctgagccaggtgctcaacctggaccactttcccctgaccttgtcc
tggacaattcagaggaacttgagtcttggggcaaaggcggagcttgcatcaggtaaacat
gtgtcctacctgaatgaccagactcgtttggaactgatccagctcctgaatggtaccaga
acacttcctgttgtgattgacgccgtgttgccatctttcttacgagcgccaagtgactcc
aacgccaaacccatcgagcagctctacacagacggctgctacaaggacattttgttgtcc
ctggagcgaacagtcaacgaaagccaagagatccaggagtggtggatcgtcgaccaacca
gcttccagtcttgtacatttggggggcgcaacttcaacagacaacagcagagaagcgggc
cttcagatctttgtgttcagtgataaagtcagcccaccgagtctcggcttcctggccgga
tatggcattatgggattgtacgcctctgtggttttggtcattgggaagttcgtacgggaa
tttttcagtggaatcagtcactccatcatgtttgaggagcttccctgcgtcgaccgcatc
ctcaagctgtgcaccgacatcttcctggtgcgtgagacaggtgagctggagctggaggag
gagctttacgccaaactcatcttcttgtaccgctcgccagagactctaattaagtggaca
agacgctga
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