Syngnathus scovelli (Gulf pipefish): 125985806
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Entry
125985806 CDS
T08785
Symbol
smfn
Name
(RefSeq) small fragment nuclease isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125985806 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125985806 (smfn)
03009 Ribosome biogenesis [BR:
sscv03009
]
125985806 (smfn)
Messenger RNA biogenesis [BR:
sscv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
125985806 (smfn)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
RNases
125985806 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
125985806
NCBI-ProteinID:
XP_049604915
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Position
18:7626061..7631416
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AA seq
187 aa
AA seq
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MNAPLSQKIVWVDLEMTGLDIEKDTILEMACIITDSNLNILAEGPNLIINQSNEQLDSMS
EWCKEHHGKSGLTEAVRRSQTTLGQAEDEFLSFVRQHVPAGQCPLAGNSVHADKRFLEKY
MPQFMNHLHYRIIDVSTIKELCRRWFPVEYQMAPPKKVTHRALEDIRESIIELQYYRASI
FKAAIEK
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcccctttgtctcaaaagatagtgtgggtggatcttgagatgacaggcttggac
atagaaaaagacacgattttggaaatggcttgcataattacagactccaatttgaacatt
ttggctgaaggacctaatttgataataaaccagtccaatgaacaactggattccatgtcg
gagtggtgcaaggagcatcatggcaagtctggactgacagaggcagtacgacgcagtcaa
accaccctgggacaagcagaggatgaatttctgtcatttgttagacaacacgtgccagct
ggacaatgtccccttgctggaaattctgtgcatgcagacaaaaggttcctagaaaaatat
atgcctcagttcatgaatcacctccactacagaataattgacgtcagcaccattaaggag
ctttgcaggaggtggtttccagtggaatatcagatggcgccacctaagaaagtaacccac
agagccttggaagacatcagggagagcataatagagctgcagtactacagagccagcatc
ttcaaagccgccattgagaaatag
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