Syngnathus scovelli (Gulf pipefish): 125985830
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Entry
125985830 CDS
T08785
Symbol
shha
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
125985830 (shha)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sscv01002
]
125985830 (shha)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125985830 (shha)
Peptidases and inhibitors [BR:
sscv01002
]
Cysteine peptidases
Family C46: hedgehog family
125985830 (shha)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Morphogens
125985830 (shha)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Intein_splicing
Vint
CENP-M
TBSV_P22
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
125985830
NCBI-ProteinID:
XP_049604976
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Position
18:12125562..12131258
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AA seq
416 aa
AA seq
DB search
MLLWIRIVLVAVVCSSLAVSPGMGCGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGAS
GRYEGKITRNSERFKELTPNYNTDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQWPG
VKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKA
HIHCSVKAENSVAAKSGGCFPATSTVSLQDGTTKPVKDLQSGDKVLAADASGKLLFTDFL
TFIDRDSSTRRLFHVVETDAGHRITLTAAHLLFVVDNSTRGASAVFASQVRPGQEVLVPD
GARLRPATVARISTKVHVGSYAPLTAQGTLVVDRVLASCYAVVNSHELAHWALAPLRLTH
WLSSVLSCAQAPNTTHEDGVHWYSKVLYHLGTWLLESRALHPLGGGGGGGGGGVSS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgtggatcagaatagtcctggtcgccgtcgtctgctcgtccttggccgtgtca
cccggtatgggatgcggaccgggccggggctacggccgcaggaggcaccccaagaagctg
acacctctcgcctacaagcagttcatccccaacgtggccgagaagaccctgggggcgagc
ggccgctacgagggcaaaatcacacgcaactcggagcgattcaaagagctcacgcccaac
tacaacacggacatcatcttcaaggatgaggagaacaccggcgccgaccggctcatgact
cagcggtgcaaagacaagctgaactcgctggccatctcagtgatgaaccagtggcccggc
gtcaagctgcgggtcaccgagggctgggacgaggacggccaccatttcgaggagtccctc
cactacgagggccgggcggtggacatcacaacgtcggaccgagacaagagcaagtacggc
acgctgtccaggctggcggtggaggccggcttcgactgggtctactacgaatccaaagcc
cacattcactgctcggtcaaagcagaaaactccgtggcggccaagtccggaggctgcttc
ccggctacctccacggtgagcctccaggacggcaccaccaagccggtcaaggacctccag
agcggggacaaggtcctggcggcggacgccagcggcaagctcctcttcacggacttcctc
acgttcatcgaccgagactcgagcacgcggcgactcttccacgtggtggagaccgacgcc
ggccaccggatcacgctgaccgccgcgcatctcctcttcgtggtcgacaactccacacgc
ggagcttcggcggtgttcgccagccaggtgcggccgggccaggaggtgctggtgccggac
ggcgcgcggctccgaccggcgaccgtggcgcgaatttccaccaaggtacacgtcggctct
tacgcgccgctgaccgcgcagggcacgctggtggtggaccgggtgctcgcttcctgctac
gccgtggtgaacagccacgaactggcgcactgggccctggcgccgctccggctcacccat
tggctgtcatcggtgctctcctgcgcgcaggccccgaacactacgcacgaggacggcgtg
cactggtactccaaagtgctctatcacttgggaacgtggctcttggagtcccgcgccttg
catcccctcggcggcggcggcggcggcggcggcggcggcgtgtccagctga
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