Syngnathus scovelli (Gulf pipefish): 125986039
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Entry
125986039 CDS
T08785
Symbol
smarcd3b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125986039 (smarcd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125986039 (smarcd3b)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125986039 (smarcd3b)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125986039 (smarcd3b)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125986039 (smarcd3b)
PBAF complex
125986039 (smarcd3b)
GBAF(ncBAF) complex
125986039 (smarcd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
125986039
NCBI-ProteinID:
XP_049605339
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All DBs
Position
18:5814451..5827843
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AA seq
513 aa
AA seq
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MATEETAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGNPVARPGL
PSPVMEAGRKRPAPSQQVQQQQQQQQQQAVQNRARKKPLGFPGGGDMVARPVDMREPQSD
PTLGSNAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPM
KQQKRKLRLYISNTFNPARPDADDSDGSIASWELRVEGKLLDDPGKQKKKFSSFFKSLVI
ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDPRLA
RLLGIHTQTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLT
SLLLPPDPIVINHVISVDPNDQKKTACYDIDVEVEDPLKSQMSSFLLSTANQQEIAALDN
KIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERRAAFY
HQPWSQEAVSRYFYCKIQQRRQELEQALAVRNT
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggccacggaggagacggcggggggagccaggaaagccaccaagagcaaactgtttgag
ttcctggtccatggagtgcgtcccggcatgccgtccggggcgaggatgccccaccaggga
gcgccgatgggcccgcccggcccgccgtacggaggcaacccggtggcgcgtcccggcctg
ccctcgccggtgatggaggctggccgcaagaggcccgccccgtcccagcaggtccaacag
cagcagcagcaacaacagcagcaggccgtccagaaccgggccaggaagaagccgctggga
ttcccgggaggcggcgacatggtggccaggcccgtggacatgcgagagccccaatctgac
cccacgctcggatccaatgcaaagaggaggaaaatggcagacaagattctcccgcaaagg
atccgcgagctggtccccgagtcccaggcctacatggacctactggccttcgagcgcaag
ctggaccagaccatcatgcgcaagcgcgtcgacatccaagaggctctcaaaaggcccatg
aagcagcagaagcgtaaactgaggctgtacatttccaataccttcaacccggcgcgtccc
gacgctgacgactcggacggcagcatcgcgtcgtgggagctgcgggtggaggggaagctg
ctggacgacccgggcaagcagaagaagaagttctcctcattttttaagagtctggtgatc
gaactggacaaagacctctacggacccgacaaccacctggtagagtggcaccgcacagcc
accacgcaggagacggacggcttccaggttaagcggccaggtgacgtcagcgttcgctgc
acgctgctgctgatgctcgactaccagccccctcagttcaaactggacccccgtttagcg
cgtctgctgggcatccacacgcagacgcgctcgtgcatcatccaggcactgtggcagtac
gtcaagaccaacaagctgcaggactcgcacgacaaggagtacatcaactgcgacaagtac
ttccagcagatctttgactgcccacggctcaagttctcagagatcccccagcgcctcacc
agcctcctgctaccccccgaccccatcgtcatcaaccacgtcatcagcgtggaccccaac
gaccagaaaaagacagcttgctacgacatcgacgtggaggtggaggacccgctgaagagc
cagatgagcagcttcctgctgtccaccgccaaccagcaggaaatcgccgcgctggacaat
aagatccacgagaccatcgagtccatcaaccagctgaagatccagagggacttcatgctg
agcttttcgcgggaccctaaaggctatatccaggactggctcaagtcccagagccgagac
ctcaagctgatgacagacgtggtggggaaccccgaggaggagcgtcgcgcggccttctac
caccagccctggtcccaggaagccgtcagccgatacttctactgtaagatccagcagagg
aggcaggagctggagcaggccttggcggtccgtaacacctaa
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