Syngnathus scovelli (Gulf pipefish): 125986062
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Entry
125986062 CDS
T08785
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125986062 (ssrp1a)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125986062 (ssrp1a)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
125986062 (ssrp1a)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
125986062 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_WDHD1
HMG_box_2
SSRP1_C
Motif
Other DBs
NCBI-GeneID:
125986062
NCBI-ProteinID:
XP_049605403
LinkDB
All DBs
Position
1:13168615..13180276
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AA seq
708 aa
AA seq
DB search
MADTLEFNDIYQEVKGSWNDGRLRFSKQNVVYKSSKTGRVDSIPAGELSLAQWRRVCLGH
GIKLSTSAGHTYKYDGFRDTDFEKISEFFKANYNMELTEKDMCVKGWNWGTAKFSGPLLS
FDVNDTTAFEVPLANVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPSQADERQDPVE
AFAQNVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEENISLSLTMSEDDVERRFE
GKLSKNMSGSLYELVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKATSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSNIEREEYGKLFDFVN
AKKLNIKNRGFKEGMKGNIDEYSDSDEDKHDAYLERMKAEGKIREEGNDSDDSDSGSDES
FNPGEEDDDIAEEYDSKASASDSSDEGDGSEDDSPKKKQKVEKPKVVREKKERKPRKERK
QKDKGGPKRPMSAYMLWLKSSREKIKSDNPGISVTEITKKGGELWRQLGKDEKEEWETKA
GEARRQYDIAKKEYKESGGGDSSISKREAKKSGGKREDKKSKSSGGDKERERSGGNESFK
SKEFIETSESSSDSDHKSKSRKKKKKEESEEEEEEAASTPASSEEESD
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacactggagttcaacgacatctaccaggaagtcaaaggctcctggaatgac
ggccggctgcgcttcagcaagcaaaatgtggtgtacaagagcagcaagacgggaagggtg
gacagcatcccggcaggcgaacttagcctggcgcaatggcgacgcgtgtgtttaggtcac
ggaatcaagttgagcaccagcgcgggacacacatacaaatatgacggcttcagggacacg
gactttgagaagatctcagagttcttcaaagcaaactacaacatggagctaacagagaag
gacatgtgtgtgaaggggtggaactggggaacggccaagttttctgggccgttgttatcg
tttgatgtgaatgacacgacagccttcgaggtccctctagccaacgtgtcacagtgcgcc
acgggtaagaatgaagtcacgctggaattccaccagaacgacgacgccgaggtctcgctc
atggaggtccgcttctacgtcccgcccagtcaggcggacgagcggcaggaccctgtggag
gcttttgcccagaatgtcttatcaaaggcggatgtgatccaggccacgggagatgctgtg
tgtattttcaaagagctgcagtgtcttacacccagaggaagatatgacattcgcatctac
ccaaccttccttcacctccatggtaagacgtttgactacaagattccctacaccaccgtc
cttcgtctattcctgctgccacacaaggaccagaggcagatgttctttgtgattagtctg
gatcctcccatcaagcagggccagacacgataccacttcctgattctgctattctccaaa
gaagaaaacatcagcctctcacttaccatgagcgaggatgacgtggagcgccgctttgag
ggcaaactgagcaagaacatgtcagggtctctctatgagctggtcagcagggtgatgaag
gccctggtcaacagaaagatcacagtgcccggtaactttcagggccactctggtgctcag
tgcatcacttgctcctacaaggcaacctcgggtctcctctatcccttggagaggggcttc
atctatgttcacaagccccctgtacacctgcgcttcgaggagatctcctgcgtcaacttt
gcccgaggcaccaccacgactcgttcctttgattttgagattgagaccaagcagggaaac
cagtacactttcagcaacattgagagggaagagtacggcaagctgtttgactttgtcaat
gccaagaagctcaacatcaagaacagaggtttcaaagagggaatgaagggtaacatcgac
gagtacagcgactctgacgaggacaaacacgacgcctacttggagcgcatgaaggctgag
ggcaaaatcagagaggagggcaatgacagcgatgattccgacagcggcagcgatgagtct
ttcaatcctggtgaggaggatgacgacattgcagaggagtacgacagcaaggcgtcggcc
agcgacagcagcgacgaaggcgacgggagtgaagatgacagtccaaagaagaagcaaaaa
gttgaaaagcccaaagtggtgagggagaaaaaggaaaggaagccacgcaaagagaggaag
cagaaagacaaaggtggccccaagcggccgatgagtgcctacatgctgtggctcaaatcc
agccgtgagaaaatcaaatcggacaaccccggaatctctgtcacagagatcaccaagaag
ggaggtgaattgtggaggcagctgggcaaagacgagaaagaggagtgggaaaccaaggca
ggagaagccaggaggcaatacgacattgcaaagaaggagtacaaggaaagcggtggagga
gactcttccatttctaagagggaggccaagaagtctggaggcaaaagggaggacaagaag
tccaagtcctctggaggagacaaggagagggagcgcagtggcggcaatgagagcttcaag
agcaaagagtttattgagaccagtgagagctcgtccgactcggaccacaagagcaagtcc
aggaagaagaagaagaaggaggaatcagaagaggaggaagaggaggctgcatccacacct
gcaagctcagaggaagagtctgactaa
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