Syngnathus scovelli (Gulf pipefish): 125986109
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Entry
125986109 CDS
T08785
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03022
Basal transcription factors
sscv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125986109 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
125986109 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125986109 (ercc3)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125986109 (ercc3)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125986109 (ercc3)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125986109 (ercc3)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125986109 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
125986109
NCBI-ProteinID:
XP_049605485
LinkDB
All DBs
Position
18:complement(9982992..9987917)
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AA seq
782 aa
AA seq
DB search
MGKRDKGDREKKSKKRFYEEEEDEEDVGSSKSQDGIPAAAGKQVDESTTKMDEYGAKDYR
VQMLLKNDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESTFP
EVIQSLLKDEKIRKCRLCAPDGTDGELITEVLHSKPAISKTVEDKGGASTSQQPSDGQTS
DQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIQQDMIEALQKRCIELEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMKSQEWGLIILDEVHTIPAKMFRSVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQSNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITQLAGMEEEDLMFSTREEQQQLLQKVLAAS
DLDAEEEAVAGDMGTKPQFSRRTGTMSSMSGADDTVYMEYQGKSKSSSLGKGIHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaagggataaaggggatcgagagaagaagtcgaaaaagcgtttctatgaggag
gaggaagatgaagaagacgtgggaagtagcaaatcgcaggatggcatacccgctgctgcg
gggaaacaagtggatgaatccaccaccaagatggatgaatacggagccaaagattatcgt
gttcagatgcttctgaagaacgatcacacctcaagacccctctgggtggctccagatgga
cacatttttctagaagcattttcaccagtgtataagtatgcacaggattttttggtagcc
attgcagagccggtgtgcagacccaaccacatacacgagtacaagttaacagcgtattca
ctgtatgcagctgtcagtgtggggctgcagacctctgacatagtggagtatctgcagaaa
ctcagcaagacctccgtgcctgatggaattgtgcaatttattaagctctgcaccgtgagc
tatggcaaagttaagttggtgctcaagcataataggtattttgttgagagcacatttccc
gaagtgattcagagtctcctgaaggacgaaaaaatccgaaagtgtcgcctttgtgctcct
gatgggactgacggcgagctcattactgaggttcttcacagcaagccagcgatctccaag
acagttgaggacaaaggaggtgcttccacctcacagcagcccagtgatggtcaaacgtcc
gaccaacaggttcctgaagacatcttcagctactatgagcaaatggacaaagaggaagaa
gaggaggaagagactcagaccgtctcttttgaaattcaacaggatatgattgaggcgtta
caaaagcgctgcattgagctggaatacccgctcctcgccgagtacgactttcggaacgat
acggtcaacccagatatcaatatagacctgaagccgactgctgtactacgaccctatcag
gaaaaaagtctgcgcaaaatgtttggcaatggacgcgctcgttccggagtcatcgtgctc
ccctgtggagcgggcaaatctcttgtgggtgtgacagcagcgtgcacggtacgcaaacgc
tgcctggtgttgggtaactcctctgtgtcggtggaacaatggaaggcccagttcaagatg
tggtccactatcgatgactctcaaatctgccgcttcacctccgacgccaaggacaagccc
atcggttgctcagtggccatcagcacttactctatgctgggccacaccaccaagcgctcc
tgggaagccgagagggtcatggagtggatgaaaagtcaagaatggggtcttattattcta
gatgaggtgcacactattcctgccaaaatgtttcgaagcgtgctgaccatcgtccaggca
cactgcaaactgggcctcacggctactttagttcgagaagatgacaagatagtggacctc
aatttcctaattgggccgaagctttatgaagccaactggatggagttgcagagcaatggc
tacatagccaaagtccagtgtgcagaggtgtggtgcccgatgtctccagagttttacaga
gagtatgtggccatcaaaactaagaagcgcatcttgctttatacgatgaatcccaataag
tttcgggcgtgccagtttctcattcgctttcatgaacggcgcaatgacaagatcatcgtc
tttgctgataatgtctttgccttgaaggaatacgcaattcgccttaacaagccctacatc
tatggcccgacctcccaaggggaacgtatgcagatcttgcagaacttcaaacataatccc
aagatcaacaccattttcatctccaaggttggagacacatcattcgacttgccagaagcc
aacgttctaatccaaatctcctctcatggcgggtcacggaggcaggaagcccagagactt
ggtcgagttttaagagccaagaaaggaatggttgcagaggaatacaatgcgttcttttat
tcgctggtgtctcaggacacccaggagatggcgtactccaccaagagacagaggttccta
gtggaccagggctacagcttcaaggtgatcacacaattggcaggaatggaggaagaagac
ttgatgttctccaccagagaggagcaacagcagctcctccaaaaggtcctggctgcgtcc
gatctcgatgctgaggaggaagcggtggcaggagacatgggtacaaaaccacagttttca
aggcgaacggggactatgagctccatgtccggcgctgatgacacagtctatatggaatat
cagggtaaaagcaaatcgtcttctctaggcaagggcatccatccgctcttcaagcgcttc
aggaaatag
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