Syngnathus scovelli (Gulf pipefish): 125986191
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Entry
125986191 CDS
T08785
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125986191 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125986191 (pan3)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125986191 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
125986191 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH_2
Pkinase
Motif
Other DBs
NCBI-GeneID:
125986191
NCBI-ProteinID:
XP_049605660
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All DBs
Position
18:11788280..11794860
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AA seq
801 aa
AA seq
DB search
MHPSVMTNGGGDGAMNSGLPASAAPLGGAGIPNVKVKFCRYYAKDKTCFYGDECQFLHED
PSMASLSPVPLSLPGGGGTPTGYSLGGSAASGAGGGTGLPKKSEAMGPAGTSLDGSLLAI
PGMEGASLSDANLTNSYFSSSFIGVNGFGSPAESKYSMMQRITTSSSSPSLLNDGAKNFS
HSTHDPVNSPTSSLFSDFGALGISQRRKAPNPTASEFIPKGAPRMATMAPSSVQAFPSPV
FAHPALNSSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPNPVNYMVPTTA
ADPSAHIIQKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKANAPSFFM
ADELRQELINRHLITMAQIDHSENTDVPSEVDSYHSLFPLEALPPPNRMQKTSNFSYITS
CYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNSVTLREVFTTKAFGDHSL
VFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWAYIVQLS
SALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDSSQSNHLALMPQYQQAD
LVSLGKVVLALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVNDIM
PMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETG
DRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGGPEKISLVSRDEKSVLVVTYS
DLKRCFDSTFQELQAASAGSL
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgcaccccagcgtgatgaccaacggcggcggcgacggtgccatgaacagcggactccca
gcctcagccgctccgctcgggggtgctgggatacccaatgtcaaggtgaagttttgccgt
tactacgcgaaagacaaaacgtgcttctatggagacgagtgccagttcctgcacgaggac
ccgtccatggctagcctgagccccgtcccgttgtctttacccgggggtggcgggactccg
acggggtattccctcggaggttccgcggcctccggcgctggaggaggaaccggcttgccc
aagaagagcgaagccatggggcctgcggggacttctctggacgggtcgttgctagccatt
ccagggatggagggagcgagtctgagcgacgccaacctcaccaattcctacttcagcagc
agcttcattggcgtcaatggatttggaagtcccgcagagtccaaatactccatgatgcag
cgaattaccaccagcagcagctctcccagtctgctcaacgacggtgccaagaatttcagc
cacagcactcacgaccctgtcaactccccaacatcatcgctcttcagcgattttggtgct
cttggcatttctcaacggagaaaggcgcccaatccgacagcaagcgagttcatccctaag
ggagctccacgaatggccaccatggcgccgtcttctgtgcaggccttcccctcgcctgtc
tttgcccacccggctcttaacagctccacagctgccgctttagctccaggcatgtcttta
tcggcgggctcatctccacttcactcgccgaaaatcacgccgcatacctcgcctgccccg
cgccgccgcagccacacccccaaccccaacccggtcaactacatggtacccaccacggcg
gccgacccgagcgctcacatcatccagaaggagaccgtcggggggaccacatacttctac
acggacaatacccctgctcccatggccgggatggtgtttcctacctaccatatctacccc
cccaccgcaccccacgtggcctacatgcagcccaaagccaacgccccgtccttcttcatg
gcagatgaactccgacaggaattaataaacaggcacctgataaccatggcgcagatcgac
cactcggaaaacacagacgtaccgtctgaggtggacagctaccacagcctgttccccctg
gaggccctcccgccacccaaccgcatgcagaagaccagcaacttcagctacatcacgtcc
tgctacaaggcggtcaacagcaaggacgacctgccctactgcctgcggaggatacacggc
ttccgcctcgtcaacaccaagtgtatgatgctggtggacatgtggaagaagattcagcac
tccaactcggtcaccctgagggaggtcttcacgacaaaggcctttggagaccactcattg
gttttctcttatgacttccacgcgggcgcagaaaccatgttcagccgacacttcaacgac
ccggcggctgactcgtattttaccaagaggaagtggggacaacacgagcctccacctccg
cggcagcatgccggcctgttgcccgagtcgctcatctgggcctacattgtccagctcagt
tcggccctgcgcaccatccacacggcgggcctggcgtgccgcgttatggaccccagcaag
atcctcatcacgggcaagactaggttacgtgtgaattgtgtgggcgtctttgacgtcctg
acctttgacagcagtcagagcaaccacctggccctgatgccgcaataccagcaagccgac
ctggtgtcgctgggcaaagtcgtgctggcgctggcctgcaactcgctggccggcattcag
agggagaacctgcagaaggccatggagctggtgtccatcaactactcgtcagacctcaag
aacctcatactatacctgctgactgaacagtctcgtctccggagcgtcaacgacatcatg
ccgatgatcggcgctcgattttacacgcagctggacgcttcgcagatgaggaacgacgtg
atcgaggaggacctggccaaggaagtgcaaaatggccgcctcttccgcctgctagccaag
ctgggcaccatcaacgagaggcccgagtttcagaaggaccccacgtggtcggaaacgggc
gaccgctacctgctcaagcttttccgggaccacctgtttcaccaggtgacggaagccggg
acgccgtggatcgacctcagccacatcgtctcctgtctcaacaaactggacgctggtggg
ccggagaagatcagcctggtgtcgcgggacgagaagagcgtgctggtggtgacctactcg
gacctgaagcgctgcttcgacagcacctttcaggagctgcaggcggcctccgctggctca
ctgtag
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