Syngnathus scovelli (Gulf pipefish): 125986270
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Entry
125986270 CDS
T08785
Symbol
spata13
Name
(RefSeq) spermatogenesis-associated protein 13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
125986270 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125986270 (spata13)
Membrane trafficking [BR:
sscv04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
125986270 (spata13)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_1
SH3_9
SH3_2
PH
DUF1604
Motif
Other DBs
NCBI-GeneID:
125986270
NCBI-ProteinID:
XP_049605850
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All DBs
Position
18:4768167..4779166
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AA seq
1216 aa
AA seq
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MAKKGPGGLTSVTMSKQAVLGSDSATLTPGVTEDSACHLDLRHSSCTGRRVFLAQIKVEQ
EDRVSSISEEPFPRFRSSNADPPIRSRPFSDLYPFRGQPERSAAPYLEPVIVGPAATDES
HPNGVGSSSGKTGSSRIMRLFSSSRKGSFSAPSPSTDGSVGLPGLGVVDSFKKMRSSVLQ
GIQNRGASGFSSSSGREAENRNAFTNGNGNFTANHYKFDFDEDDDITEGLQRNSRFSRSM
RRAYEAGRITMLDMDEESLAAGNADHKKAEINGQADNSSNATLLSRLSRSAENLYLFKIP
FRRKTPTPSPQTDPQSTTATNGAPNIQRTSSASSVDLSGLRKSPLRVKGQMLKLVGSISD
VNNLRQQSQSPSPTSPAPMSPLSRLHDDYSRRVPCRSTSERRRRPSPVRTRVMSAGHAPL
VHAPLVHAPPQLDVAVLQRHFSVADGSLEITTCGFVSEDQSPPYTRTDELPNEVTSEERE
QVLQQDGNSSETSPRTSAFPVFLPDSPTSSASEAPTVKSRRQGGRPRPRPISDYGQLLSR
RHCIPEEAAELNPDERTRSLHPECLGNGVCDSGEECGVSANIPGRRQQQRPVSVMGVEDL
YSPDADEECIPSSLPRPPIPSHQVPPYKAVSARFRPPTLSQSTPIGLDRVGRRKLHRVLS
DGVAQGSAALDDSVSEEEEEDGSFDELADGTPYLEPSVELSVLVELISSGHAVYAEALWD
HVTMEEQELAFKAGDVIRILDASHKDWWWGRGPDKEAWFPSSFVRVRVNQEDSCAGSVES
VADQEDLTSRETHSSQHRQQMRTNVVQEIMNTERVYIKHLKDICEGYIRQCRKHPEMFTE
LQLKTIFSNIEDIYKFQRQFLRELEKKYNKDQPHLSEIGSCFLLQGEGFSIYSEYCNTHP
AACAELQRLMKSGRYKHFFEACRLLQQMIDISIAGFLLTPVQKICKYPLQLGELLKYTPK
EHSDHGGVSDAYKAMKNVASLINERKRRLESVDAIAHWQVAILHWEGPDVLVRSSELIHS
GELTRILRQGKMQQRSFFLFDHQLVFCKKDILRRDLLHYRGWLDMDLTEVLDVPDGRDPD
LGLTLRNAVRLRHVDTLEFVCMLCCRKLQDKERWLQAFKKERRRVKEDQEMGIEISEEQR
KHAIANAKRAKQGKIQTLGYSGSVPPHHQNLHPLHQRHVTIPTSVPQQQVFALAEPPKRK
PYQLLYSITRSAFFRK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaaaggaccaggagggttaacatcagtgactatgagcaagcaggcggtactc
ggcagcgacagcgccacactaacaccaggagtgacggaagattccgcgtgccatttggat
ctgcgacacagctcttgtactggacgtagggttttcctggctcaaattaaggtagaacaa
gaggacagagtctcgtccataagcgaagagcctttccctcgcttccgctcctccaacgcg
gaccctccgattcggagtcgaccattcagtgacttgtacccattccgcggtcaacccgag
aggagcgccgccccctacctggagccagtcatcgtgggccccgccgccacggacgagagc
cacccaaacggcgtgggctcctcctctgggaagaccggctcctcaagaatcatgaggctg
ttttccagctccaggaagggctccttttctgcgccgagtccctccaccgatggttccgtc
ggtctccccggactcggcgtcgtggactcatttaaaaagatgcgctcctccgtgcttcag
gggattcagaatcgcggagcaagtggattttcatcctcgtccggtcgggaagctgaaaac
cggaacgccttcaccaacggcaacggaaatttcaccgcgaatcactacaaatttgatttt
gacgaagacgacgacatcacagagggcctccaacgcaattcccgcttctcccggagtatg
aggagagcgtatgaagccggacgcattaccatgttagacatggacgaggagagcctcgca
gcgggcaacgctgaccacaagaaagccgagatcaacgggcaagcggataactcgtccaat
gcgaccctgctgagccgactgagtaggagtgcggaaaacctttacctttttaaaatcccg
ttcaggcgcaagacccccaccccgtcccctcagacggaccctcagagcaccacagcaaca
aacggggctccgaatattcagaggaccagcagcgcctcctcggtggacctcagcggtctc
aggaagagcccgttgagagtgaaggggcaaatgcttaagctggtaggcagcattagcgac
gtgaacaacctgcgccaacaaagtcagtcgccttccccgacctcacccgctcccatgtcg
cccctgagccgtctccacgacgactactcccgacgcgtgccttgccggagcaccagcgag
cgacggcgccgaccctcacccgtcagaacccgggttatgtccgccgggcacgccccgctg
gttcacgcgccgcttgttcacgcgccgcctcaactggacgtggccgtgctgcagcgtcac
ttctccgtggcagacgggtccttggaaatcaccacgtgcgggtttgtgtcagaagaccag
tcgcccccttatacccgaacagacgagctaccgaatgaggtcacgtcagaagagagggag
caagtgttgcaacaagatggcaactcctctgaaaccagccccagaacttctgccttccca
gtcttcctcccagactcgcccacctcatccgcctcggaggctcccaccgtcaagtccagg
cgacagggcgggcgcccgagaccgcggcccatctcggactacgggcagctcctctccagg
aggcactgcatccccgaggaggcggccgagctgaatcccgatgagaggacgcgctcgctt
catccggaatgtctcgggaacggcgtgtgcgacagcggcgaggagtgcggcgtgagcgct
aacatcccaggcaggcggcagcagcagcgacccgtgtctgtgatgggggtggaggacttg
tactcccctgacgcagatgaggagtgcattccttcttccctgccgcggccacccatcccc
tcccaccaggtgcccccctacaaggcagtctcggccaggttccgcccccccaccctctcc
cagagcacccccattggactggaccgcgtgggcaggagaaagctgcaccgagtgctcagc
gacggcgtggcccaaggctcggcggcgttggatgacagcgtgagcgaggaagaggaggaa
gatggcagcttcgacgagctggccgacggcacgccctacctggagccaagcgtggagctg
tccgtgctggtggagttgatcagctcgggtcacgccgtgtacgccgaggccctgtgggac
catgtgaccatggaggaacaggagctggccttcaaggcgggcgacgtaatccgcatcctg
gatgcctcgcacaaggattggtggtggggcagggggcctgacaaggaggcctggttccct
tccagctttgtccgggtgcgtgtgaaccaggaggactcctgcgcggggagcgtggagagc
gtggcggaccaggaggacctgacttctcgggagacgcacagcagccagcacaggcagcag
atgaggaccaatgtggtgcaggagattatgaacacagaacgcgtctacatcaagcacctg
aaagacatctgcgagggttacattcgtcagtgccgcaagcacccagaaatgttcactgag
ctccagctgaaaaccatctttagcaacattgaagacatctacaaattccagaggcagttt
ctacgcgagctggagaaaaagtacaacaaggaccagccgcatctcagtgaaatcggctct
tgctttctcttgcagggcgagggcttttccatctactcggagtactgcaacacccaccca
gcggcctgcgccgaactgcagcgcctgatgaagtccggccgctacaagcacttctttgag
gcctgccgcctcctgcagcagatgattgacatttccatcgccggcttcctgctcactcct
gtccagaaaatctgcaaataccccctgcagctgggggagctgctcaagtacacccccaaa
gagcacagcgaccatggcggggtgagcgatgcctacaaggccatgaagaacgtggcaagt
cttatcaacgagaggaagcggcggctggagagcgtggacgccatcgcccactggcaggtg
gccattctgcactgggagggccccgacgtgctggtgcgcagctctgagctgatccactcc
ggggagctgactcggatcctccgccagggtaaaatgcagcaacgcagcttcttcctattt
gaccaccagctggtcttctgcaagaaggacatcctgcgccgggatctcctccactaccgt
gggtggctggatatggacctcaccgaagtgcttgacgtgcccgacgggcgggacccggac
ctgggcctgaccctgaggaacgctgtacggctgcgccacgtcgacactctggagtttgtg
tgcatgctgtgctgcaggaagctccaggacaaggagcggtggctgcaggccttcaagaag
gagaggcggcgggtcaaagaggaccaggagatgggaatagaaatcagcgaggagcaaagg
aagcatgctattgctaacgccaaaagagcaaaacagggcaagatccaaactttgggctac
tccggctccgtaccacctcaccaccaaaacctccacccgctccaccaacgccacgtgacc
atccccaccagcgtgccccagcagcaggtgttcgccctggccgagccgcccaagcgaaag
ccttaccagctactctacagcatcacccgcagcgcctttttcagaaagtga
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