Syngnathus scovelli (Gulf pipefish): 125986350
Help
Entry
125986350 CDS
T08785
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125986350 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
125986350 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125986350 (lsm5)
03041 Spliceosome [BR:
sscv03041
]
125986350 (lsm5)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125986350 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
125986350 (lsm5)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125986350 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
125986350
NCBI-ProteinID:
XP_049605985
LinkDB
All DBs
Position
18:complement(6599195..6600245)
Genome browser
AA seq
91 aa
AA seq
DB search
MAATQATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFELT
PEGRRITKLDQILLNGNNITMLIPGGEGPDV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaactcaagcgacgaatccttcccagttgctcccgttggagcttgtggacaag
tgcattggttctcgaatccacattgtcatgaagacggacaaagaaatcgtcgggactctg
ctgggcttcgacgactttgtcaacatggtcctcgaggatgtgactgaatttgaattaacg
ccagagggtcgcaggattaccaagttggaccagatcctactcaatggcaacaatatcacc
atgctcatcccaggcggggaggggccagatgtttaa
DBGET
integrated database retrieval system
