Syngnathus scovelli (Gulf pipefish): 125986516
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Entry
125986516 CDS
T08785
Symbol
slit3
Name
(RefSeq) slit homolog 3 protein isoform X1
KO
K06850
slit 3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125986516 (slit3)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Axon guidance molecules
125986516 (slit3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
hEGF
LRRNT
Laminin_G_1
LRR_9
EGF_TEN
LRR_14
LRRCT
EGF_DL_JAG
JAG1-like_EGF2
EGF_3
Motif
Other DBs
NCBI-GeneID:
125986516
NCBI-ProteinID:
XP_049606033
LinkDB
All DBs
Position
1:22042766..22210875
Genome browser
AA seq
1533 aa
AA seq
DB search
MSRGAELNRLWALSLALVLVLCVVSSVHTCPHKCSCSGSHVDCQGLGLKTVPKGIPRGAE
RLDLNRNNITRITKVDFSGIKNLRILHLEDNQISVVERGAFQDLRLLERLRLNRNRLTLL
PELLFQSNPKLGRLDLSENQIQAVPRKAFRGITNVKNLQLDSNHISCIEDGAFRALRDLE
ILTLNNNNITLIPLSSFNHMPKLRTLRLHSNNLHCDCHLSWLSDWLRARRGLAPFTQCMA
PAHMRGLNVPDVQKKDFVCSGPTHVESRTCEPLVAVCPPSCTCNNNIVDCRRKSLSEIPA
NLPEGIVEIRLEQNLIKSVPPGAFSSYKKLKRIDLSKNQISDIAADAFSGLRSLTSLVLY
GNKITELPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLHNLNLLSLYDNKLQTISKGLF
TPLRSIKTLHLAQNPFMCDCHLKWLADFLFDNPIETSGARCSHPRRLANKRISQVKGKKF
RCTGQEDYRSRLSGECFQDLVCPDKCRCEGTMVDCSNLKLTRVPSHIPEHTTDLRLNDNE
IAVLEATGMFKKLPNMRKINLSNNKLREIREGSFDGASGVLELLLTGNKLTGLQGRMFRG
LTGLKTLMLRSNQISCIDNTTFTGLSSVRLLSLYDNRISSIAPGAFATLHSLSTINLLSN
PYVCDCHLAWLGQWLKKTRVVSGNPRCHRPAFLKEIPIQDVANPDFTCDGVEDNGCLPAS
GCPDVCTCSDSVVRCSNRGLRSLPKGIPKDATELYLEGNMLTSVPKELAALKHLLLVDLS
NNSISTVSAYTFSNMTQLATLILSYNQIRCIPVHAFHGLKSLRLLTLHGNDLSTIPDGAF
NHLTALSHLALGANPLYCNCELRWLSQWVKAGFKEPGIARCTGPPDMADRLLLTTPLNKF
QCKGPVDIALVSKCAPCLAGPCQNNGTCVSDPSGSYQCTCPFGFKGQDCETAINACVSFP
CLNGGTCHLQPGFEDHFSCVCPPGFEGQRCELNPDDCEDNDCENNATCVDGVNNYTCVCP
PNYTGDLCEEVLDPCLPDFDPCEHDSKCVHVGRSYRCECLPGYVGHFCEQDYNDCLENKC
QHGAECVDAVNGYTCVCKEGFSGLFCENPPPMILLQTSPCDHSECQNGAQCLLVAGEPVC
RCMPGFYGNKCDKMATVHFLGREAYVELPGAKLRPNVHISLQVATDKDNGILLYKEDHDP
LALELYQGHIRLIYDMASYPPTTVYSVESVNDGLFHTVELLIQNHSLSLVVDNGAPKSLG
KLARQPSVDHDTQLYIGGVPYQVLATGFRPSPERSPQFFNGCIHNVQINGEVQDLSYRAT
GGRPVEGKSDGVLVGCHSCSVCAQGTCREGGEMGVTCQCPPGRSGTLCEQATVSNPCQGT
RCVHGLCVPKGASYSCKCSEGYQGQFCEQQQEPTACRGQRCGHGECRVSEGGEPVCNCLP
GYAGPTCDTELTCQGEMVREQLKRHQAMRTCTSTSKIPRMDCPRSCQTVAPPGVCCGVSK
TRRRKVMFRCTDGTSHSEEMETALECGCARCPL
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggggccgaactcaaccggctttgggctctctctttggccttggtcctggtt
ttgtgcgtcgtgtcgagcgtgcacacatgcccgcacaagtgcagctgctccggatcccat
gtggactgtcagggtctggggctcaagacggtaccgaaggggatcccgcgtggggctgag
cgcctggatctgaacagaaacaacatcacccggatcaccaaagtggacttctccggcatc
aagaaccttcgaattcttcacctggaggacaaccaaatcagcgtcgtcgaaagaggagcc
ttccaagacctgcgactgctggagagactccgactaaacaggaacagactcacgctgctt
ccagaacttctcttccagtccaatcccaaactaggccgactagacctgagcgagaaccag
atccaggcggtgccgaggaaagccttcagaggaatcaccaacgtcaaaaacctgcaactg
gacagcaaccacatcagctgcattgaagatggggctttccgagcactgcgcgatctggag
attctcactctcaacaacaacaacatcaccctcatcccgctgtccagcttcaaccacatg
cccaagttgcggacactgcgtctccactccaacaaccttcactgcgactgtcacctgtcc
tggctctctgattggctgcgagcgaggcgcggcttggcacctttcactcagtgcatggcc
cccgcccacatgaggggcctgaatgtgcccgacgtacaaaagaaggattttgtctgcagt
ggccccacccacgtcgagtcgcggacatgcgagcccctggtggcagtgtgcccgcccagc
tgcacgtgcaacaacaacattgtggactgtcgccgcaaaagtctgtccgaaatacccgcc
aacctcccggagggcatcgtcgagattcgtttggagcagaacctgatcaaaagtgtccca
cctggagccttttcttcatacaagaaactcaagaggatagacttgagtaagaaccaaatt
tccgacatcgccgccgatgccttcagcggcctccgctcgctcacctccctggtcctgtat
ggcaacaagatcactgagctaccgaaaggattgtttgatggcctggtgtccctgcagcta
ctcctcctgaacgccaacaagatcaactgtctccgcgtcaacaccttccaggacttgcac
aatctcaacctgctgtcactgtatgataacaagttacaaaccatcagtaaaggacttttc
acaccactgcgatccatcaaaactcttcatctggctcagaatccctttatgtgcgactgt
cacctgaaatggcttgccgactttctgttcgacaaccccatcgagaccagcggggcgcgc
tgcagccacccaagaaggctggccaacaagcgcatcagccaagtcaagggcaagaagttt
cgttgcacaggtcaagaagactatcgcagccgactgagcggcgagtgtttccaggacctt
gtttgtcccgacaaatgccgctgcgagggcaccatggtggactgctccaacctgaaactg
acccgcgttccctcgcatatcccggaacacactactgacctgcggctgaacgacaacgag
attgctgtactggaggcgacggggatgttcaagaagcttccgaacatgaggaaaattaac
ctgagcaataacaagctgcgggaaatccgcgaaggatctttcgatggagcgtctggggtt
ctggaacttctcctgactggcaacaagctcacgggtctgcagggacgaatgttcagaggc
ctcactggactgaaaactctaatgttgcggagcaaccagatcagctgcattgacaacacg
acattcacgggcctgagctcagtgcgtctgctgtcgctgtatgacaaccggatctccagc
atcgccccgggagcctttgccaccctacactccctctcgacaattaacctcctgtccaac
ccttacgtgtgcgactgtcacttggcctggctgggtcagtggttgaagaagaccagagtg
gtgagtggaaaccctcgctgtcatagacccgccttcctcaaggagatccccatccaagac
gtggccaaccccgacttcacatgtgatggtgtcgaggataacggctgtcttcctgcatct
ggctgtcccgatgtctgcacatgctcagacagcgtggtgcgatgcagcaacagagggctg
cgctcgctgcccaagggcattcccaaggacgccacggaactttatctggagggtaatatg
ctgacttctgtgcccaaggagctggcggccctgaagcatctattactggtagacctgagc
aacaacagcatcagcacagtgtcggcgtacaccttcagcaacatgactcaactggccacg
cttatcctcagctacaaccagattcgctgcatcccggtccacgccttccacggtctcaag
tcgctccgcctgctgaccctccacgggaacgacctctcaactattccggacggcgcgttc
aaccacctcacggctttgtcccacctggctttgggtgccaaccccttgtactgcaattgc
gaactacgctggctctcccagtgggtgaaggccggattcaaagaacctggtattgctcgc
tgcaccggacctcctgacatggctgacaggcttctgctgactacaccgctcaacaaattc
cagtgtaaaggtccggtggatatcgcccttgtgtcaaagtgtgcaccctgcctggcgggg
ccttgccagaataatggcacgtgtgtgtccgacccatctggatcctaccagtgcacctgt
ccatttggatttaagggtcaggactgtgaaacggccattaatgcctgtgttagtttcccc
tgcctgaatggagggacgtgtcaccttcagccgggctttgaagaccacttcagctgcgtg
tgcccgccgggtttcgagggccaacgctgtgagttgaacccggacgactgcgaagacaac
gactgcgagaacaacgccacctgcgtcgacggtgtcaacaattacacttgtgtctgtccg
cccaactacacaggtgacctttgcgaggaggttctggatccctgtctccccgattttgac
ccctgtgagcacgattctaagtgcgtccacgttggtcgcagttacaggtgtgagtgttta
ccaggctacgttggccatttctgcgagcaggactacaacgactgtctggagaacaagtgt
caacatggcgcagagtgcgtggacgcagtcaacggctacacgtgcgtgtgcaaggagggc
ttcagcggcttgttctgcgagaatcccccgcccatgatcttgctgcagaccagcccgtgc
gatcacagcgagtgccagaatggcgcccagtgcctgctggtggccggcgaacccgtctgc
cgctgtatgcccggtttctacggcaacaaatgtgacaagatggccaccgtccacttcctg
gggcgggaggcatatgtggagctcccgggcgcaaagctacgccccaatgttcatatttca
ttgcaggtggccaccgacaaagacaacggtattttgttgtataaggaggatcacgacccc
ctggctctggaactttaccaagggcacatacgactcatctatgatatggccagctatcct
cccacgactgtgtacagtgtggagtctgtcaacgacgggcttttccacaccgtggagctg
ttgattcagaaccattcgctcagcctggtggtggacaacggcgcccccaagagcctgggc
aagctggcacgccaaccctccgtcgaccacgacacgcagctttacattggaggcgtaccc
taccaagtcctggccacggggtttcggcccagtccggagcgctcgcctcagttcttcaac
ggttgcattcacaatgtccaaatcaatggggaagtgcaggacctgagctatagagctacg
ggagggcgaccggtcgagggcaagagcgatggcgtcctggtgggctgtcactcgtgtagc
gtgtgcgcgcagggaacgtgcagagagggcggagaaatgggcgtcacttgtcagtgcccg
cccggacgcagcgggactttgtgcgagcaggccacagtgtcaaatccctgtcaaggcact
agatgtgttcacggcttatgtgtacccaagggggcgtcctacagctgcaaatgcagcgaa
ggctaccagggccagttctgtgagcagcagcaggagcccacagcctgcagggggcagcgc
tgcggccacggcgagtgcagggtgtctgagggaggggagcctgtatgcaactgtctgcct
ggctacgccggacccacctgtgataccgagttgacatgtcaaggcgagatggtgcgagag
cagctgaagcggcaccaagccatgaggacgtgcacatccaccagcaagatcccgcgcatg
gattgcccccggtcgtgccagaccgttgcgccgcccggcgtctgctgtggcgtcagcaag
acccgcaggaggaaggttatgttccgctgcacagacggcacctcgcactccgaagagatg
gagacggccctggagtgcggctgcgccaggtgcccgctctaa
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integrated database retrieval system
