Syngnathus scovelli (Gulf pipefish): 125986606
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Entry
125986606 CDS
T08785
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125986606 (prdm1b)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
125986606 (prdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_15
zf-C2H2_6
zf-met
zf-C2H2_jaz
C2CH-3rd_BIRD-IDD
STL11_N
Zf-C2H2_ZNF451_C
zf-CCCH_6
zf-C2HE
B129_C2H2-zf
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
125986606
NCBI-ProteinID:
XP_049606297
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Position
19:3562462..3570280
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AA seq
704 aa
AA seq
DB search
MKEESTQSDMSTWREIDFALNCTYIVPDQVSNPSFNLPKAMTSIPRNLSFEYNKEEVSGV
FSKEYIPQGTRFGPLQGDIYTKDNVPKQANRKYFWRIYNNGQLQNFLDGYDVHRSNWMRY
VNPARFLSEQNLVACQNGRDIYFYTIRPVEPKQELLVWYSQEFAQRLCSQQENNKHKTMN
VADEQENTKQPIWPEEKTKEEVKEERHDEEVDVEMLGRDTPPDTPDEQIMDFSKKIEKQE
KMDRDQEEFIPSPQPEQIHRVNPPYLPDHLSALSSDQRNLPLHLHGLYGHREGLVSSHPL
YPQSRPLQPPYQLLPPFTSHYPRLLLPSYSPPFPGMLPSRGSLQYGSYLGTDGIPYPPLS
TPNLLTMSMPYSSSPQGGLKELTPNVSPPRGAPATPDLSPVPKPTSQFPSPGHTSSSYEE
AVNLTVDITKGNSGSRNRPGHKSLPYPLTKQNGKIKYECNICAKTFGQLSNLKVHLRVHS
GERPFQCNLCKKSFTQLAHLQKHHLVHTGEKPHECQVCQKRFSSTSNLKTHLRLHSGEKP
YQCKLCNTKFTQYIHLKLHRRLHSSRDRPYHCQMCSQAFFHHFSLRIHQRSCCPANSGSP
VNVHMKEMLERFDASQESDSLTETASASQVEEAVERWLARTLEGEGKEDQKEATFLLKAL
TLAVNAPVGQSAAPVSQHSSLAAYQERASVVHLHKSSTVKVEGQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggaaagcacacaaagtgatatgagcacttggagagaaatcgactttgctctt
aattgtacctacatcgtaccggatcaagtgtcgaacccaagtttcaacctgccaaaggcg
atgacttccattcctcgcaacctttcgtttgaatacaacaaggaggaggtgagcggtgtg
ttcagcaaagagtacattcctcaggggactcgatttggtcctctgcaaggagacatctac
accaaagacaacgtccccaaacaggccaacagaaaatacttctggaggatttataacaat
gggcaacttcagaacttcctcgatggctacgacgtccacaggagcaactggatgcgttac
gtcaacccggcaagatttctgagcgagcagaacctggtggcttgccagaacggtcgagac
atctacttctacaccattcggccggtggaacctaaacaggagctgctcgtgtggtacagc
caagagtttgcccagaggttatgcagtcagcaggagaataacaaacacaaaaccatgaat
gttgccgacgagcaagaaaacaccaaacagccaatatggcccgaggagaagacaaaggaa
gaagtgaaagaggagagacatgatgaagaagtggatgtggagatgttggggagagacact
cctccagatactcctgatgagcaaatcatggatttcagcaaaaagattgagaaacaggaa
aagatggaccgggaccaggaggagttcattccatcccctcagcctgaacaaatccacaga
gtgaatcctccttacttacccgatcacctctctgcactatcatctgaccaacgaaattta
ccccttcacctccacggcctttacggccacagggaaggcctggtgtcttctcaccctctt
taccctcaatccagacccctccagccgccctaccagctccttcctcccttcacctcacac
tatcctcgccttctcctcccttcatactcccctccgttccccgggatgctcccttctaga
gggtccctccagtatggtagctatctcggcacggatggtatcccataccctcccctcagc
acccctaatcttctcacaatgtccatgccatactcttcatccccacaaggcggtttgaaa
gagctaacccctaacgtctccccaccgagaggcgccccggcgacccctgacctctctcct
gttcccaagccgacaagccaatttccctcacctggacatacttcctctagttacgaggaa
gcagtgaacctaacggtggacattaccaaaggcaactcggggtcacgcaatcgtcccggg
cacaaatccttgccctatcctctgacgaaacagaatgggaagatcaagtatgaatgtaat
atctgcgcaaagactttcggacagctgtcgaatctcaaggtccacctccgagtacacagc
ggcgagagacctttccagtgcaacttgtgtaaaaagagtttcactcaactggctcatcta
cagaagcaccatctcgtccatacaggagagaagccgcatgagtgccaggtgtgtcaaaag
cgtttcagtagcaccagcaacttgaaaactcaccttcgacttcattctggggaaaaacct
taccaatgcaaactgtgcaacaccaaattcactcaatacatccacctcaagctccatcgt
cgtctccacagcagtcgtgatcgaccttaccactgccagatgtgttcccaggccttcttc
caccatttctcccttcgcatccaccaacgcagctgctgcccggccaactcgggttcaccc
gtcaacgtccacatgaaagaaatgctcgaacgctttgacgctagccaagaatccgactcc
ctcacggaaacggcgtcggcgtcacaggtggaggaggctgtggagagatggttagctcgt
accttggaaggtgagggtaaggaggaccagaaagaagccacctttcttctgaaagctcta
actctggctgttaacgcacctgtcggccaatcagcagccccggtttcccagcacagttct
ctggcggcctatcaggaaagagctagcgtcgtccatcttcacaaaagttcgacggtcaag
gtggagggtcagtga
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