Syngnathus scovelli (Gulf pipefish): 125986750
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Entry
125986750 CDS
T08785
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125986750 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125986750 (exosc7)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125986750 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
125986750 (exosc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
125986750
NCBI-ProteinID:
XP_049606569
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Position
19:complement(1999828..2001684)
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AA seq
291 aa
AA seq
DB search
MATVQVSEAEKVYILHGIRDDLRVDGRSCEDYRHMEIETDVVSNTDGSAKVSLGHTAVLV
GIKAELGKPRPTAPNEGYLEFFVDCSANATPEFEGRGGEELSTELSNTLYKVFNNKHSVD
LKSLCISEGEHCWVLYVDVLLLQCDGNLYDAMSVAIKAALFSTKIPKVHISTDDEGGKEI
ELSDDPYDCMRLNVENVPCIVTLCKIGHRHVVDATLQEKACSVASLIISVTHAGTVTCVR
KIGGGSLDPESIFEMTQTGKRVGKVLHVPLLKLLQQEESLGTARQKVGFLA
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggtacaagttagcgaagctgaaaaagtgtatatattacatggtataagggat
gatctgcgagtggatggaaggagctgtgaagactacagacatatggagattgagactgac
gtggtgtccaatactgacggatcggccaaagtttctctgggccacacagcagtactagta
ggaattaaggctgaactaggaaaaccaaggcccacagctccaaatgaaggctatttagaa
ttctttgttgattgttcagccaatgcaaccccggagtttgaggggcgaggaggagaggag
ctcagtacggagctgagcaacacactatacaaagtcttcaacaacaaacacagcgtggac
ctgaagagtctgtgcatcagtgagggagaacattgctgggtgctctatgtggatgtactg
cttctgcaatgtgatggaaacctgtatgatgccatgtcagtagctatcaaggcagctttg
tttagcaccaagatccccaaagtgcacatatcaacagatgacgaaggagggaaggaaatc
gagctgtcagatgacccctatgactgcatgaggctcaatgtcgagaatgttccctgtata
gtgacattgtgcaagatcggccacagacacgtggtggacgccaccctgcaggagaaggcg
tgctcggtggccagcctcatcatctccgtcacccacgcgggaacagttacctgcgtgaga
aaaataggcggaggtagcctggaccccgagagcatctttgaaatgactcaaacaggcaaa
cgggtcggaaaagtcctccacgtgcctcttctgaagcttctgcaacaggaggagagttta
ggaacagcgagacagaaagttggctttcttgcttag
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