Syngnathus scovelli (Gulf pipefish): 125986774
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Entry
125986774 CDS
T08785
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125986774 (trim71)
04121 Ubiquitin system [BR:
sscv04121
]
125986774 (trim71)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125986774 (trim71)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125986774 (trim71)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125986774 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
TEN_NHL
zf-RING_5
zf-C3HC4
zf-RING_2
Invasin_D3
LRR_NXF1-5
Ig_GEX2_N
zf_RING_Vps8_fungal
BBP1_C
Motif
Other DBs
NCBI-GeneID:
125986774
NCBI-ProteinID:
XP_049606593
LinkDB
All DBs
Position
19:4048159..4065883
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AA seq
829 aa
AA seq
DB search
MASFPDSDLQTCPLCKELCGSSAPISSSSSTSSSSSHTSSSSSQTSRRLHVLPCLHAFCR
QCLEAQRSPGDPLKLRCPTCDQKVSISEAGVDSLPSTNFLFSNLLDVVVSTEEQIQNKNG
HHHPNRGGLSSSSFHPTHGSLLHPPHVMAEPQCSSCDEQNLATSHCLDCQEYLCDNCVRA
HQRVRLTKDHFIERLGENLHVARVNSNPGQPAMSVSLAQSLQNNFALLSLFQDRMSFCQH
HDNEVFLFFCESCSVPICRECSMSRHVGHTFVYLQEAVQDCRSVTIQLLADAQKGRQAVQ
LSMEKVQAMAEQVEIKAKVVQTEVKALVLRHKKALEERECELLWKLEKIRQLKAKSLYLQ
VEKLHQSLTKLDSTIAAVTQVLDEGRHIDVLLARERMLTQIHELKALRGLMQPQEDDRFM
FTPPDQALYIAIQSMGLISSGAFAPVTKAHGDGLNTALRGKHAAFTVIGYDHDGEPRLSG
GDMVTAIVMSVADANLSAAEVTDHQNGSYTVSYMAKCEGEHLVSVLVCNQHIQGSPFKVF
VKSGRSYGSLGSQVSSFGGEGEGDGQLCRPWGISVDKEGYVVVADRSNNRIQIFKPCGAF
HHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFEGQFLLKFGEKGTKNGQ
FNYPWDVAVNSEGKILVSDTRNHRVQLFSPDGSFLNKYGFEGALWKHFDSPRGVAFNHED
HLVVTDFNNHRLLVIRPDCQSARFLGSEGIGNGQFLRPQGVAVDQENRIIVADSRNHRVQ
VFEPNGNFLCKFGTQGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatttccagactcggacctgcagacgtgcccactctgcaaagagctgtgtggc
tcctcagcccccatttcctccagctcgtcaacctcctcttcctcctcccacacctcttcc
tcctccagccagaccagcaggagacttcacgtcctgccctgcctccacgccttctgcagg
cagtgcctggaggcccagcgcagtccaggagacccgctgaaattacgttgccccacttgc
gaccagaaggtgtccatctctgaggccggcgtggactcgctgccttccaccaacttcctc
ttcagcaacctgttggatgtggtagtgagcacagaggagcagatccagaacaagaatggc
caccaccaccccaatcgaggaggcttgagctcctccagcttccatcccacccacggaagc
cttctgcacccaccccatgtcatggcagaacctcagtgtagctcctgtgacgagcagaac
ctggccacgtcccactgcctcgattgccaagagtatctgtgcgacaactgcgtccgtgct
catcaacgggtgaggctcaccaaggaccacttcatcgagcggctcggggaaaatctccac
gtggcccgagtcaacagcaacccgggccagccggccatgtcggtgtccctcgctcagtcc
ttgcagaacaactttgcgctgctgtcccttttccaggaccggatgagcttctgtcaacac
catgacaatgaggttttcctgttcttttgcgaaagctgctccgtgcccatctgcagagag
tgcagcatgagccgtcacgtgggtcacacttttgtttacctccaagaggccgtgcaggac
tgcaggtccgtcaccatccagctgctggctgatgcacaaaagggacgacaggccgtccag
ctgagcatggagaaggtccaggccatggcggagcaggtggagatcaaggctaaggtggtg
cagacggaagtgaaggccctggtcctcaggcacaagaaagcgctggaggagcgagagtgt
gaactactgtggaagttggagaagatccggcagctgaaggccaagtcgctatacctacag
gtggagaaactgcaccagagtctgaccaagttggacagcaccatcgccgccgtcacccag
gtgctggacgagggccgccacattgacgtgctgctggcgcgcgagcgaatgctcacccaa
atccatgagctcaaagcactgaggggcttgatgcagccccaggaggacgaccgcttcatg
ttcacgcctccagaccaggctctttacatcgccatccaatccatgggcttgatcagcagc
ggcgcctttgccccagtcaccaaagcgcacggcgacggtctcaacactgcgctccgcggc
aagcacgccgcttttactgtgatcggctacgaccacgacggcgagccgcgtctctccggc
ggcgacatggtgacggcgatagtcatgtcggtggcagacgccaacctctccgccgcggag
gtgaccgaccatcagaacggctcgtacacagttagctacatggccaaatgcgagggggag
cacctcgtctccgtcttggtgtgcaaccagcacattcagggaagccccttcaaggtgttt
gtgaaatcgggccgcagctacggctcgctggggtcccaagtgtcatcgttcggaggtgaa
ggcgagggggacggtcaactttgtcgtccttggggcatcagcgtggacaaggagggatac
gtggtggtggcggaccgcagcaacaaccgcatacagatattcaagccttgtggtgcattc
caccacaaatttggctccctgggttctcgacccggtcagtttgatcgtccggccggggtc
gcctgcgacagccagaggcgaatcattgtggccgacaaggacaatcaccgtgtgcaggtg
tttacttttgagggccagttcctgctgaagtttggggaaaaggggaccaagaatgggcag
tttaactatccctgggacgtggctgtcaactccgagggtaagatcttggtttccgacacg
aggaaccaccgcgtgcagctattctcccccgacggctcgttcctcaacaagtacggtttc
gagggggctctgtggaaacactttgactcacccagaggcgtggccttcaaccacgaggat
cacctagtggtgaccgacttcaacaaccaccggttgctggttatccggcccgactgccag
tccgcccgctttctgggctccgagggtatcggtaacggtcagttcctgcggccccaaggt
gtggccgtggaccaggagaaccgaatcatcgtggccgactcccgaaaccaccgcgtgcaa
gtatttgagcccaatggaaatttcttatgcaaatttggaacccaggggagcggctttgga
cagatggatcgtccctccggggtcgccgtgactccggacggagtcatcgtcgtcgtcgac
ttcgggaataatcgtatcctcaagttctag
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