Syngnathus scovelli (Gulf pipefish): 125986783
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Entry
125986783 CDS
T08785
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125986783
NCBI-ProteinID:
XP_049606609
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Position
19:1558987..1580207
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AA seq
1622 aa
AA seq
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MKFRLGCRITLVLVILAVTLSGERAEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VANLVESFDVAPDKTRVAVVRYSDRPTTEFNLGRHGSLEEVKEAARNIRYLGGNTMTGDA
ISYTTNNIFSEQNGARPPAKGIQKVAILLTDGRSQDYVLEPARAAAQAGVRMFAVGIGEA
LKVELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKQDSPSY
GLQQVPGFDLMEYFSVRNILGTRQDEGQSAYVRLGTMPIVQQTEGVYPQGLPDEYAFVTT
FKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRVVFRNSEVDN
LFDRNWHKIGLSVEAKTVSLYLDCQLIQTLPIGDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDSKHAELETCCDLPNGPCPKKIATEAPPIAVPTPTPTSVEQRRGPQANCSCPG
GEKGAAGAPGRVGLKGEKGEVGPRGASGLPGLRGEKGESGKVISGRGEKGEKGDRGSIGL
TGAPGQRGEKGVSGIPGIDGESGDKGEKGEAGRAGIPGLPGLIGEKGVQGDAGYQGSPGP
KGVSGVDGKKGEKGSTGQSGERGLDGLPGKPGFHGKDGLRGQAGLPGASGVKGDKGEQGI
PGLPGDVFQKEGLRGEKGELGLPGPPGADGPPGPPGPPGRQGIPGEPGEFGQRGKKGESG
LPGVDGLPGPIGPIGPLGPPGKPGNTGPPGLPGEIGFSGKPGEPGKPGVPGKDGQDGAPG
NDGAMGPRGERGTDGFPGKAGPKGDDGPPGPRGPPGERGLAGPPGLAGADGARGERGSPG
DRGQEGPFGPKGEKGDKGEVGDRGLPGVPGNVAEVIPEPGEPGKPGEKGEKGDQGKTGEM
GPRGLPGEQGFKGPPGLPGSKGDTGLQGETGRVGDPGPPGVAGPQGPRGLPGSVGIPGIV
GPPGPAGERGDKGESGKPGQAGQRGLPGEPGLIGPQGPTGKGKDGLPGEPGPRGNDGPPG
PKGPPGLRGEPGLPGDRGSPGEGKTGAQGPPGNNGNPGPPGLRGLPGIAGPDGPAGHNGV
PGRPGEKGSPGEPGKAADLSDIKLKDICSDCPAGPPGQAGVPGLPGDKGQQGPPGKDGQD
GYQGAPGLPGPQGPPGADGGKGLKGDRGTSGMPGDKGEKGHPGPPGHPGPAGMTGAAGND
GQPGPPGPQGPPGEKGKEGLKGIQGPPGLPGAIGPPGKIGKDGIQGEQGEPGKQGEPGPL
GNPGLRGLPGFKGHRGEPGPPGSKGEDGKDGLPGRDGKPGKEGQKGPPGPEGLIGPRGEP
GKQGEPGPSGKSGLPGTPGLRGERGEHGNPGLPGFSGPKGPPGPPGPVGPEGKQGVPGRP
GDRGLKGEKGDGGIKGDKGQSGEPGIPGNTGPPGRKGHTGMMGMSGPPGEVGSPGPQGPS
GNPGIPGPRGESASVEQMRRLIQEELSKQLDAKLAYLMAQMQPAHVKSSTGRPGAPGLPG
KDGNPGRPGPPGEPGMPGLNGGEGSRGPAGPKGERGTKGDKGDSGVGERGEQGPPGAIGP
AGMPGYGKDGSPGQSGAQGEPGNPGPTGQPGPPGPTGQCDPSQCAYYASLANRPHTKNVK
GT
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgaaattccgactgggctgtaggatcacactggtcttggtcatcctggccgtgactctt
tctggagaaagagcagaagctcagagggcagggtgcaaaaacgtccactacgacttggcc
ttcatcctggatacctcgtccagtgtgggcaaggagaattttgagaagatcaggcaatgg
gtggccaacctggtggagtcttttgacgtggctccggacaagacccgagtggccgtggtt
cgctacagtgaccggcccaccacagagttcaacctggggagacacgggagcctggaggag
gtgaaggaagccgccaggaacatacgctacctgggggggaatacaatgaccggagatgct
atcagctacaccaccaacaacatcttttcggagcaaaatggagcgaggccacccgccaaa
gggatccagaaggtggccatcttgcttacggacggccgaagtcaggattacgtcctggag
ccggcccgggcggccgcccaggctggcgtccgaatgtttgcggtgggcatcggcgaagca
ctcaaggtggagctggaggagattgcggcagagccaaagaacgcccacgtcttccacgtg
acggacttcaacgccatcgataaaatcagggggcgactcaggaggaggctgtgcgaaaac
gtattatgtccaaacatgaaggtgcaacctgatcgctttaaacaagacagcccaagttat
ggccttcaacaagttccaggcttcgacctgatggagtacttcagtgtccgaaatattctg
ggtaccagacaagacgagggtcagagtgcgtacgttcggctcggcaccatgcccatcgta
cagcagacggaaggcgtgtaccctcaggggctgccagatgagtatgcctttgtgacaaca
tttaaattcaggaaaacctcaagacgagaagattggtacctctggcaaatctttgacaaa
tatggaatcccacaggtgtccatcaggctggacggtgagaacaaggcggtggagtacaac
gcggtgggcttaaccaaagacgccgtccgagttgtgttcaggaactcggaagtggacaac
ctgtttgaccgcaactggcataagataggcctgagcgtggaggccaagaccgtttctctc
tacctggactgtcaactcatccagacgctgcccatcggcgacagggaggacatcgatatc
caaggaaagacggtcatcgggaagcgattatacgacagcgtgcctattgattttgacctc
cagaggatggttatctactgcgactccaaacacgccgagcttgaaacctgctgcgattta
cccaacgggccttgccctaaaaaaattgcgaccgaggctcctcccatcgcggtccccact
ccgacaccaacctcggtggagcagcggcgaggccctcaagcgaattgctcctgccctggc
ggagagaagggagcggctggcgcaccgggccgtgtcggtctcaagggtgaaaagggtgaa
gtcggccctcgaggtgcctccggtctgccgggccttagaggagaaaaaggagaaagtggc
aaagtcatctctggtagaggtgaaaaaggtgagaagggcgatagaggcagcataggcttg
acaggtgcccccggtcaaagaggagagaagggtgtcagcggtattcccggtatcgacggc
gaatctggagacaaaggcgaaaaaggagaagctgggcgggctggcattccaggacttcct
ggtctgattggagaaaagggcgttcaaggtgacgcaggttatcaaggatcaccaggacca
aaaggcgtctccggtgtcgatgggaaaaaaggcgaaaagggatcaacaggacaaagtggt
gagcgcggcttggatggattacccggaaaacctggatttcacggcaaagacggcttaagg
ggacaggccggcttgcccggggccagtggggtcaaaggtgataagggggagcaaggaatt
cccggattacccggtgatgtgttccaaaaagagggtctaagaggagaaaagggagaactt
gggcttccagggcctcctggggctgacggcccaccaggaccacctggtcctccgggtcga
caggggataccaggggaacccggggaatttgggcaaaggggaaaaaaaggtgaaagtgga
ttgcccggagtggacggactccccggaccgatcggtccaataggtccactgggaccgcca
gggaaacctggcaacaccggcccacctggtctgccgggtgaaattggattttccggcaaa
cctggcgagcctggaaagcctggtgttcccggtaaggatgggcaggacggtgctcctgga
aacgatggcgctatggggcccagaggagagcgtggaacggatggttttcctggcaaagct
ggaccaaagggagatgatggacctccaggaccaagagggcctccaggggagcgaggatta
gctggcccacccggtttagctggtgctgatggagcaagaggagagaggggaagtcctggt
gacaggggacaagagggaccttttggcccaaaaggtgaaaagggtgacaagggtgaagta
ggagacaggggactgcccggcgtgcctggaaatgtagcagaggtcattcctgagccgggt
gaacctggaaaaccaggagaaaaaggagagaaaggggaccaaggaaagactggagaaatg
ggcccaagaggattacctggcgagcaaggctttaagggtccacctggactaccgggttca
aaaggagacacgggacttcaaggagagacaggacgtgttggggacccagggcctcctggt
gtggctggtcctcaagggcctcgagggctcccaggcagtgtgggcataccaggcatcgtt
gggcctcctggtcctgctggagagagaggagacaagggggagtcaggcaaaccagggcaa
gcaggtcaacgaggactccccggagagcctggtttgattggaccccaaggaccaacaggg
aaggggaaagatggactacctggagaaccgggaccacggggaaatgacggacccccaggg
ccaaagggtcccccaggattaagaggagagccaggcttaccaggggacaggggctcccca
ggggaaggcaaaacaggagctcaggggccccctggaaataatgggaatcccggaccacct
ggcctgaggggtttgcccggcatagctggtcccgacggacctgcagggcataacggagta
ccgggaagaccaggcgagaagggatcacctggagagcctggaaaagcagcagacctttct
gacatcaaacttaaggacatttgctcagactgcccagcaggtcctcctggacaagcaggt
gtcccgggactgccgggcgataaaggacaacaaggacctcctgggaaagatggtcaagat
ggctatcaaggcgcaccaggcctaccgggacctcaaggacctcctggagctgatggagga
aagggacttaaaggtgaccgaggtacttctggaatgccaggagataagggagaaaagggt
caccctggacctccaggtcatcccggtcctgctggaatgacgggcgcagcgggcaatgat
ggacaacctggtcctcctggtccacaaggaccccctggagagaagggcaaagaaggtctc
aaagggatccaaggtcctccgggtcttcctggcgcgattggtccacctggcaaaatagga
aaagatggtatccaaggtgaacaaggagaacctggcaaacaaggtgaacctggaccactt
ggaaaccctggtcttcgtggactcccaggcttcaagggtcacagaggagaacctggtcct
cctgggtcaaagggagaagatggaaaagatggattacctggacgggatggcaaacctgga
aaggagggtcaaaaggggcctcctggacctgaaggactcattggaccaagaggcgaacca
ggcaagcagggtgaaccggggccgtcgggtaaatcaggtctcccaggaactccgggtttg
agaggggaaaggggagaacatggaaatccaggattaccaggcttcagtgggcctaagggg
cctccgggtccgccaggtcctgttggtccagaaggaaaacagggagtcccaggccgacct
ggcgatcgtggccttaagggggaaaaaggagacgggggcattaaaggtgataagggacaa
tctggagaaccaggcataccaggaaatacaggaccacctggtagaaagggccacactggg
atgatgggcatgtcaggaccaccgggtgaagtgggatctcctgggccacaaggaccttct
gggaatccaggaataccaggacccagaggggagtccgcatcagtggagcagatgagaagg
ctcattcaggaggaattgtccaagcaattggatgccaaattggcctacctcatggctcag
atgcaaccagcccatgtgaagagttccacgggtcgcccgggagcgcccggccttccgggt
aaagacggcaaccctgggcgacctggcccgcccggggaaccgggcatgcctggactgaac
ggaggcgaaggatcgaggggacccgcgggtcccaaaggtgaaagaggtactaaaggagac
aaaggagattctggggttggtgaaagaggagagcaaggtcctcctggtgcaataggcccg
gccggtatgccgggttatgggaaagacggcagcccgggacaatccggagcccaaggggag
ccaggaaatcccggccccaccggtcaaccgggccctccgggacctaccgggcaatgtgac
ccctcccagtgcgcctattacgccagccttgcgaacagacctcacaccaaaaatgtcaag
gggacttaa
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integrated database retrieval system
