Syngnathus scovelli (Gulf pipefish): 125986785
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Entry
125986785 CDS
T08785
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125986785
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125986785
09142 Cell motility
04820 Cytoskeleton in muscle cells
125986785
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sscv00535
]
125986785
Proteoglycans [BR:
sscv00535
]
Extracellular matrix (ECM) proteoglycans
Others
125986785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
125986785
NCBI-ProteinID:
XP_049606616
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Position
19:complement(1580065..1591789)
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AA seq
945 aa
AA seq
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MAFRCSALTRKHPWTYSPVHMALVALLLAPALGQLDFNRLDGDTVCPPMRSGQDDLPGFD
LITQFQLDVIPLKGVRKVDGSTALQVAYRLDREANFQIPTMLNFPRGFPDEYSFMVTFRM
IKNTVSKVWNVWQIVDEDGRKQAGMRLNGDQQSLEYFLTSPDGNLQTVTFPGLSVLFNTK
WHKVMIGVEREQVTLYVDCQPVDQKPIKGKGAINTEGDTLIGRLDADPEASVVFELQWML
IHCDPKRAQRESCNELPATEMFANAEPERSVPGPPGVSGPEGPRGPAGEDGRDGRDGLPG
SPGSPGPAGSKGEQGEIGLPGQRGLPGLAGPTGPPGPMGPRGIVGERGLPGFPGPAGPAG
PSSEGPPGPPGKPGIPGDEGNIGPEGAPGAKGDTGKAGPPGLPGPPGPAGPPGPSGEGSG
ESCPAACPAGPQGLAGLPGMKGHKGMPGEDGKDGIPGEKGDSGPEGPQGAPGRMGDDGQR
GPIGPPGTTGEKGDKGPPGFNGMPGPTGPPGPPGVEGLRGRQGFDGPKGDEGAMGSQGEQ
GPQGNKGDVGAPGKDGLDGIPGTDGAKGEPGPVGTVGVRGVVGIPGLPGKPGLVGPTGEK
GDAGADGAIGPIGLPGKTGEDGKPGEDGKPGEKGSTGGSGKQGPVGPAGPPGIEGEKGEK
GNAGETGMKGHTGHKGDQGPMGPEGPKGSLGATGLPGDPGVKGDQGPPGIPGIKGEYGTK
GDRGATGPEGRPGRPGHEGVAGPMGSRGLEGEQGLPGPPGPRGLPGPRVSDDNLREMCSA
VVEEQLGEFMKDFLKRPAALGAPGVPGQAGPPGPAGADGAPGPPGAQGPMGVKGHPGYFG
MPGSPGKKGDTGAKGDKGDKGEAGVGIKGSAGLPGAPGAPGAPGIGKDGKDGEPGEQGSP
GVPGAAGPKGPSGPPGLCDPSTCTNRNPPPLFMYGGKKSSTYRKK
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggccttccgctgctctgctttgacgagaaagcatccatggacatactcgcctgtccac
atggccctggtggctctcctgcttgctcctgcacttggacaactggactttaatcgactg
gatggcgacaccgtctgcccacctatgagaagcggacaagatgatcttccgggttttgat
ttgatcacccaattccagcttgatgtcatcccgctaaaaggcgtgaggaaggtagacggc
tcaactgccctgcaagtggcctaccgcctggaccgggaggccaacttccaaattccaacc
atgctgaacttccctcgcggtttccccgatgagtactccttcatggtgacgttccgcatg
atcaagaacaccgtgagcaaagtgtggaacgtctggcaaatcgtggacgaggacggtcgc
aagcaagccgggatgagactcaacggggaccagcagtccctggagtacttcctgaccagc
cccgacggcaacctccagaccgtcaccttccccggcctctccgtgctcttcaacaccaag
tggcacaaggtgatgatcggcgtggagcgcgagcaggtcacgctctacgtggactgccag
cccgtggaccagaagcccatcaagggcaagggggccattaacaccgagggggacactctc
atcggcaggcttgacgctgaccccgaagcgtctgtggtgtttgagctccagtggatgctg
attcactgcgacccaaagagagcccagcgtgagagctgcaacgagttaccagctaccgag
atgtttgccaatgctgagcctgaaagatccgtcccaggcccccctggagtcagcggcccc
gagggtcctcgcgggcctgcgggggaagatggtcgagatggacgagatggtcttccaggg
tctcctggcagcccgggtccggctggtagcaaaggcgagcagggggaaattggacttcct
gggcagcgaggcctacctggtcttgcaggaccgactggtcctccgggcccaatgggtccc
cgagggatcgtgggcgagagaggtcttcctggttttcctgggcctgcaggtcctgctggc
ccatcaagtgaaggacctccaggaccaccaggaaaaccgggaatcccgggcgatgaaggc
aatattgggcctgagggtgcaccaggagccaaaggggatactggaaaggcaggacctcca
gggcttccaggacctcctggtccagcgggccctcctggtcccagtggtgaggggagtggg
gaatcttgccctgcagcctgccctgctggacctcagggattggctgggctaccaggcatg
aagggacacaaaggtatgcctggtgaagatggcaaagatggtatacctggagaaaaggga
gattctggacctgaaggccctcaaggtgcgccaggtcgcatgggagacgacggacaaaga
ggacccattggacctcctggtacaacaggagaaaaaggagataagggtcctccaggtttt
aatggcatgcccggacccaccggcccacctggacctcctggtgtggagggattgcgtgga
cgtcaaggttttgatggacccaagggtgatgaaggcgcgatgggatctcaaggggagcag
ggtcctcaaggaaataagggagatgttggagcgccgggcaaagacggcctagatggaatt
cctggaactgatggtgccaagggagagcccgggccggtcggaaccgttggcgttaggggg
gttgtgggcattcctgggcttccagggaagccaggattagttggacctactggtgaaaag
ggcgacgccggtgctgatggagccatcgggccaattggacttccgggcaaaaccggtgag
gacgggaaacccggagaagatggaaaaccaggagaaaaaggctcaactggtggatcaggg
aaacaagggccagtggggccagcaggtcctccaggtatcgagggtgaaaagggcgagaaa
ggcaacgctggggaaactggaatgaaaggtcacactggacacaaaggagatcaggggccg
atgggaccagagggaccaaaaggaagtttgggagctacaggtcttcccggagatcctgga
gtcaagggagatcagggtccacctggaattcctggaattaaaggagagtatggaacaaag
ggcgacagaggagcaaccggaccagaaggtagaccgggtcggccaggccatgagggcgtg
gctggtccaatgggatcccgagggctggagggagagcagggtttacctgggccaccgggt
cccagaggtctgcctggcccaagagttagcgatgacaaccttcgggaaatgtgctcggct
gtggttgaagaacaattaggagaattcatgaaagatttcctaaagaggcccgccgcattg
ggagctcctggcgtcccaggacaagcgggaccaccaggccctgctggagctgatggtgcg
ccgggaccaccgggagctcaagggcccatgggggtcaaaggccatccgggctactttggc
atgccaggttcaccgggaaagaaaggtgacactggagctaagggagataaaggagataaa
ggtgaagctggtgttggaatcaaaggaagtgcaggactaccaggtgcaccaggtgctcca
ggtgctcccggcattggcaaagatgggaaggatggagaacctggcgaacaaggaagcccc
ggcgtcccaggagcagccggtccaaagggtccatctggtccaccaggtctttgtgaccca
tcaacctgcacaaaccgaaatccaccacctctctttatgtacggcgggaagaagtcatcc
acttacagaaaaaagtga
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