Syngnathus scovelli (Gulf pipefish): 125986852
Help
Entry
125986852 CDS
T08785
Symbol
grin2da
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2D isoform X1
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04020
Calcium signaling pathway
sscv04080
Neuroactive ligand-receptor interaction
sscv04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
125986852 (grin2da)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125986852 (grin2da)
04082 Neuroactive ligand signaling
125986852 (grin2da)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125986852 (grin2da)
Ion channels [BR:
sscv04040
]
Ligand-gated channels
Glutamate (ionotropic)
125986852 (grin2da)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
DUF8168_N
Motif
Other DBs
NCBI-GeneID:
125986852
NCBI-ProteinID:
XP_049606722
LinkDB
All DBs
Position
19:complement(6540700..6561216)
Genome browser
AA seq
1939 aa
AA seq
DB search
MAAPRPASRLSLLLAVLACTGPARPSPPLLLRPRERERDSGSVNIAVVHSGSSLLPQTAA
AAGAGEPAPGLGSGPGGGQRGVSDVGSPAAAVASSFAAASSVSLLVAEIVMTPSGQATVI
YLKVNESSPGSLLLQLCELLATTPLQGLVFEEERPPPPNRAPLAPMLEFISAQTGVPVLA
VGGGASLGREPQESGSIYLQFTCSTALQLEVIFEVLEEYDWTSFSVVTTRHHGYEDFLDM
VEAMTDGSFIGWERKSVVVLNITDDPGGARAKRVLKDHEAQVRLLYCSLEEAELVFRAAW
ASGQAGPSHMWFAVGPALSGLGLEGLPKALFAIRPQGWRDEPRRRIAKGVSVLTHGATAL
RRDLGAAGRALYTGNCQSDGNRTQRVADRIRYFTNISIGGRDYSFNDDGYLSNPLLEVIS
YNNGRGWEEVGWWENGHLHLRDHPWSRYGPFLKPLDDAQHLRVVTLEERPFVIVEPADPG
TSSCIRDSVPCRMPPNSSLPADSASPTKHCCKGFCIDVLKRLATIVGFTYDLYLVTNGRH
GKNIDGEWNGMVGEVVSDRADMAIGSLTINEERSEVVEFSVPFVETGISVMVSRSNGTVS
PSAFLEPYSPAVWVMMFVMCLSVVAVTVFIFEFFSPVGYNRSLQSAKKLGGSKFTIGKSV
WLLWALVFNNSVPVENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYIDTVSGL
SDKKFQQPTEQYPPLRFGTVPNGSTEENIRSNYPNMHQYMIRNNQKGVEEAIDNLKTGKL
DAFIYDAAVLNYMARKDEGCKVMTIGSGKVFATTGYGIALHKNSRWKRPLDLALLQLVGD
DEIDMLERLWLSGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWKL
RHCIKRSGGMDFLLALSRGMYSCCQFEDETAPGSGKSSLPQYHAVPTVAQQHLVTATVNN
TAAITMVQPQQQQQPAPKHIPKQPQGQTYASVLPGSPPPAGHSAMALGPSNSPLFEGPMP
CSTFLPRHDRRLAVVDRWNRPKPEKVLSGSSSASLGIGGIAGGITELQAQQQYQQNLGQH
WKLQGAGDSGLDEYKRYYGPIDPEGLGANSDQQVGGSQQTPKGNPRGPKSAGMSRPPSKG
SGALIGKPPPPLPSSPRRPPFWRRGSLAQTRRKSSGGPLYENILPLGRRGGGRYGAGDLM
GRRGRRAPPLPPLPVPLCSPTHTPTTPSSPCRFYSTCSSASSSSSSSTSSSSSSSSSASV
SRSDSPSSCSSDSSYNSSLSFRYRAGDREFTVEDEYDSDLLTEESSLLLGSRRKIRCRRM
SSRSLPCSPPPPVPPRKPRPQRDDGRERRSSQLAQLQEWWASWGDRERGRSGTTNPRGVR
EDKRERKERERENKRRKKGRKKKREERERERERKRRKAKKKKKKDEKLRKRERKKSDQEG
RDPDKREEAKPGTPDYPSYLHLKGESFGKKSESSVRSYGWNIPAEDERKAREEKEREDGK
ESRAAERQHRRRNSKHYQSSSNKPSASVKFWAGNLSSDTIPSAFLPLLPVGSKRRKSKSS
DRDVVGIEGERKPLLGRNGRGEIPPKEGLSFHAWESDLEEDEESERERRKGEYAKRQGGT
ISDEDGDRDKGAGIYSDDEGSSGEFGKFERYWDDHDDTAVGGIGGGGWFFSTYPSRDKAG
SVNSRDDLFLERGERWGAGESAWAWGSRRPPSPLAPPPPRRYWSVDKLHIQDEKKTKRRS
KDKTRGPAACSSCLSPGHHPHVRSSKWAGITSRSQEELYHHRQSFSSTSKPKHDSSSSSK
PDRSQNPTSKCGSQLSLSIQQRTQRSERGRLPSPPSALMPNLPSPLPALPAPPSSAHPIH
APPLTSSSSSVSSPSVVSSIPGATRPSSVASASAKLQYQRLRSVPPPQRFPQSPHVPLKA
KALCSRRGSAHFSSVESEV
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccgcggccagcttctcgcctctcgctgttgctggctgtcctggcctgcacg
gggcccgcgcggccctcgccccccctgctgctgcggccccgggagagagagagggactcg
ggtagcgtcaacatcgccgtggtgcactctggatcctccctgctcccgcagacggcggcg
gcagcgggggccggagagccggcgcccggactcgggagcggcccgggcggcggccaaagg
ggcgtgagtgacgtgggttccccggcagcggccgtagcgtcctcatttgccgctgcttcg
tcggtgtcgctgctagtcgccgagatcgtgatgacgccgtctgggcaggccaccgtcatc
tacctgaaggtcaacgagagcagcccggggagcctcctgctgcagttgtgcgagctgctc
gccaccacgccgctgcagggtttggtttttgaggaggagaggccgccgccccccaaccgc
gccccgctggcccccatgctggagttcatctcagcccagaccggcgttcccgtgctggcg
gtgggcggaggggcgagcctgggacgagagccgcaggagagcggctccatctacctgcag
ttcacgtgctcgacggcgctgcagctggaggtgatcttcgaggtgctggaggagtacgac
tggacgtcattctcggtggtcactacccgccaccacggttacgaggacttcctggacatg
gtggaggccatgacggacggctccttcatcggctgggagcgaaaaagcgtggtggtcctc
aacatcacagatgaccccggtggcgcccgcgccaaacgtgtgctcaaggaccacgaggcg
caggtgcgcctgctgtactgctccctggaggaggcggagcttgtgttccgagcggcctgg
gcgtcgggccaggcgggccccagtcacatgtggttcgccgtgggcccggcgctatccggc
ctgggtctggaggggctgcccaaggccttgttcgccatccgacctcagggatggagagac
gagcctcgcaggcgcatcgccaagggcgtgtcggttctgacccacggcgccacggcgcta
cggcgcgacctgggcgccgccggccgggctctctacaccggaaactgccagagcgacggc
aaccgcacgcagcgggtggctgacagaatcaggtacttcaccaacatctccatcgggggg
cgggactactccttcaacgacgacggctacctgtccaatccgctgctggaagtcatctcg
tacaacaacggacgcggctgggaggaggtgggctggtgggagaatggccacctgcatctg
cgcgaccacccgtggtcacgctacggcccattcctcaagccactagacgatgcccagcac
ctgcgagtggtcacgctggaagagagacccttcgtcatcgtggagcccgccgacccgggg
accagctcctgcattcgtgactcggtgccctgccgtatgccgcccaactccagcctgccg
gcggacagcgcctctcccacaaagcattgctgtaaaggcttctgcatcgacgtccttaag
aggctggccacgatcgttggcttcacctacgacctctacctggtcaccaacgggcgccac
ggcaagaacatcgacggcgagtggaacggcatggtgggcgaggtggtgtccgatagagcc
gacatggccatcggttcgctcaccatcaacgaggagcgctcggaggtcgtggagttttcc
gtacccttcgtggagacgggcatcagcgtgatggtttcccgtagcaacggcaccgtgtcg
ccgtccgcctttctcgagccctacagtccggccgtgtgggtgatgatgttcgtcatgtgt
ctgtcggtggtggccgtcaccgtcttcatctttgagttcttcagcccggtcggttacaac
cgcagtctgcagagcgccaaaaagttgggcggctccaagttcaccatcggcaagtcggtt
tggctcctgtgggcgctggtcttcaacaactctgtgccggtggagaacccgcgaggaacc
accagcaaaatcatggtcctggtgtgggccttcttcgccgtcatcttcttggcgtcctac
actgccaacctggccgccttcatgatccaggaggagtacatcgacactgtgtcgggactc
tccgacaaaaagttccagcagcccaccgagcagtacccgccccttcgcttcggcacggtg
cccaatggcagcacggaggagaacatccgctccaactatcccaacatgcaccaatacatg
atccgcaacaaccagaagggtgtggaggaagccatcgacaacctgaagacgggtaaactg
gacgctttcatctacgacgctgctgtgctcaactacatggccaggaaggacgaaggctgc
aaggtgatgaccatcggctccggcaaagtgtttgccaccaccggctacggcatcgctctc
cacaagaactcccgatggaagagaccgctggacctggcgctcttgcagctggtgggagac
gacgaaattgacatgttggagcgtctttggttgtcgggaatttgccacaacgacaagatt
gaggtgatgagcagcaagctggacatcgacaacatggcgggcgtcttctacatgctgctg
gtggccatgggcctcagcctgctggtctttgcctgggagcatctggtctactggaagctg
cggcattgcatcaagcgctcgggcggcatggacttcctgctggcgctcagcaggggaatg
tacagctgctgtcagtttgaggacgagacggcaccgggaagcgggaagagttctctgccg
cagtaccacgcggttcccaccgtggcccagcaacacttggtgaccgccacagtcaacaac
accgccgccatcaccatggtgcagccgcaacagcagcagcagccggcgcccaagcacatc
ccaaagcagccgcagggtcagacgtacgccagcgtgctgccaggatcgccgccccctgct
ggacactcagccatggcgctgggaccctcaaacagccccctctttgaaggccccatgccc
tgctccacctttctgcctcgtcatgaccgcagactggccgtggtagatcgctggaaccgg
cccaagcccgagaaggtcctgagtggcagcagcagtgccagcctgggtatcgggggtatc
gcgggaggcatcactgaactccaggcccagcagcagtaccagcagaacctggggcaacac
tggaaattgcaaggagcgggtgacagtgggctggatgagtacaagcgctactacggtccc
atagatccggaggggctcggagctaactcggaccagcaggtcgggggcagccagcagact
cccaaaggtaatcccagaggccccaaatctgccggcatgtccaggccaccttccaaagga
tccggagccttaatcggcaagccgccgcctccgctgccttcctcgccacggaggccccct
ttctggcggcgtggaagtcttgctcagacgaggaggaagagctccgggggccccctgtat
gagaacatcctgcctctggggagaagaggaggcggcaggtacggagcaggtgatctcatg
ggaaggagggggcggcgtgctcctcccctacctcctctgccagtcccgctttgttccccg
acgcataccccaaccactccctcgtcaccatgccggttctactctacctgctccagcgcc
tcgtcatcgtcgtcctcgtccacgtcttcctcgtcctcctcgtcctcctccgcctcggtc
tctcgctcggattctccttcttcttgctccagtgacagctcctacaactcctccttgagc
tttcgctatcgtgccggagaccgggaattcacagtggaggacgagtatgactcggatctg
ctgacggaagagtccagtctcctcctgggctcgcgccggaagatccgttgccgtcgcatg
tcgtcgcgctcgctgccgtgcagtccaccgccgcccgtcccgccacgtaagccgcgccca
cagagagacgatgggcgagagcgcaggagcagccagctggcgcagttacaagagtggtgg
gcatcatggggtgacagagaaaggggtcgctcggggacaaccaaccccagaggtgttaga
gaagacaaaagggagcgaaaagagcgggaacgtgagaacaagcgcaggaagaagggaaga
aaaaagaagcgcgaagaaagggagcgagaaagggagcgaaagcgacgcaaagccaagaag
aagaaaaagaaagatgaaaagctaaggaagagggagagaaaaaagtcagaccaggaagga
agagatcctgacaagcgagaggaggccaaaccgggaacgccggactacccgtcgtacctt
cacctgaaaggggagtcctttggcaaaaagagcgagagctctgtcaggagctatggttgg
aacattccagccgaggatgagaggaaggccagagaagaaaaagagcgagaggatggcaag
gaaagccgagcggccgagaggcagcacaggcgcaggaacagcaaacactatcagtcctcc
agcaataagccgtccgcatctgtcaagttctgggcagggaacctctcctctgacaccatc
ccatcggccttcctgcccctcttgcccgtcggatccaaaaggagaaagagcaaaagctcc
gacagggatgtggttggaattgaaggagagagaaagccactgctgggtcggaatgggaga
ggtgagattcctcctaaggaaggtttatccttccatgcgtgggagtctgatctggaggaa
gacgaagagtctgagcgagagcgacggaaaggcgagtatgccaagaggcaaggcgggacc
atctcggatgaggacggagaccgggataagggtgcggggatatattcggacgacgagggc
tcttcaggcgagtttggcaagtttgagaggtactgggatgatcacgatgacacagcagtg
ggcgggattggaggagggggctggttttttagcacctacccctccagggacaaagcgggg
agcgtcaacagcagggacgacttgttcctggaacgaggggagaggtggggggccggggaa
agtgcttgggcatggggctcacggcgcccgccctctccgctcgcgccgcccccgcctcga
cgctactggtcggtggacaagcttcacatccaggatgagaagaagaccaagcgacggtcc
aaggacaaaacgagaggacccgctgcttgttcttcctgcctctcaccgggacaccatccg
cacgtccgttcttccaagtgggcaggcatcacctcacgcagccaagaagagctttaccat
caccgccagagcttcagcagcacctcaaagcccaaacacgactcgtcgtcgtcctccaag
ccggatcgctcgcagaaccccacctccaaatgtggaagccagctcagcctgagcatccag
cagcggacacaaagatcggagagagggagacttccttccccgccttccgccctcatgccc
aacttgccaagccccctccccgcgcttccagcgcctccatcctctgctcacccgatccat
gctcctccactgacatcctcctcctcctctgtgtcctcaccctcggtggtatcgtccatc
ccgggcgccacgcggccttcctccgtagcttcggccagtgccaaattgcagtaccagagg
ctgcgctcggttcctccgccccaaaggtttcctcagtcccctcacgtgcccctcaaagcc
aaggccctctgctcccggaggggctcggcccatttctccagcgtggagagtgaggtctga
DBGET
integrated database retrieval system
