Syngnathus scovelli (Gulf pipefish): 125986956
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Entry
125986956 CDS
T08785
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04145
Phagosome
sscv04814
Motor proteins
sscv05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125986956
09142 Cell motility
04814 Motor proteins
125986956
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125986956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125986956
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125986956
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
125986956
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
125986956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Dynein_IC2
WDR55
Beta-prop_EML
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
125986956
NCBI-ProteinID:
XP_049606881
LinkDB
All DBs
Position
19:complement(2626734..2647827)
Genome browser
AA seq
649 aa
AA seq
DB search
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEATQKAEIQQKTEATSEDSDLDRKR
RETEALLQSIGISPEPPLGPNTLSPSKSMGTPSETESQDSADSGAAGRSGFSKSKSEVQS
LRTLQWDTDPSVLQLQADSELGRRMQKLGASKITQVDFQPKELVLYSKETQTPHTAHVSE
GEEEEEDEELMETKPGPGSEPQDEDDKENKEGSFPVLRELTEEERQQIMHSSDFQNFFDC
SIRVMERALAESGDIFFDYGGRALEDKEGDLAGGSSLCFTRLFYDDHWSKHRVVTCLDWS
PQYPELLVASYNNNEDAPHDPDGVALVWNIKFKKATPEYIFHCQSPVVSVGFARFHPNLV
VGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNANNLITVSTDGRMC
SWSLDMLSQPQESMELVYNKSKAVAVTSMDFPTGDVNNYVVGSEEGTVYTASRHGSKAGI
CEIFEGHQGPVTGISCHNAVGTVDFSHLFITSSFDWTVKLWSTKQNKPLYSFEDNADYVY
DVMWSPVHPAIFASVDGMGRLDLWNLNNDTEVPTASVTIEGASALNRVRWSSGGKEVAVG
DSEGRVWVYDTGELSVAHSDDWTRFARTLMEIRANRADGEDEGPMELAS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaaaagtgacctaaaagcggagctggagcgcaagaagcagcgcctcgcccag
atcagggaggagaaaaagagaaaagaggaggagaggaagaagaaagaggcaacccaaaaa
gcagagatccaacagaagacggaggcgacctcagaggactcggacttggaccgcaaacgc
cgggagaccgaggccctgctgcagagtatcggcatttcacccgagcctcctttagggcca
aatactttatccccatccaaatcaatgggcacgcccagtgaaaccgaaagccaggattca
gctgatagcggggcggcaggcaggtcaggtttctcaaaaagcaagtcggaggtacaaagc
ttaaggaccctgcagtgggacaccgacccctctgtgctgcagctgcaagcagattctgag
ctcgggcggaggatgcagaagctgggcgcctcgaagatcacgcaagttgatttccagccc
aaagagttggtcttgtacagcaaggagacgcaaacgccgcacacagcccatgtatctgaa
ggagaagaggaagaggaggatgaagagctgatggaaacgaaaccaggccccgggtcggag
ccgcaggatgaagacgacaaggaaaataaagaaggctccttccctgtgctacgggagctg
acggaggaggagaggcaacaaataatgcactcgtccgacttccagaattttttcgactgc
agcatccgagtgatggagagagctctggcggaaagcggcgacatctttttcgactacggt
ggtcgtgccctagaagacaaggaaggagatctagctggaggctccagtttgtgcttcacg
agacttttctacgacgaccattggtccaaacatcgcgttgtcacctgtcttgactggtct
cctcagtatcccgagttgcttgttgcctcctacaacaacaacgaagacgccccccacgac
ccggacggtgttgccctggtatggaacatcaaattcaaaaaagccacgccggaatacatc
ttccactgtcagtctccagtggtgtcggtcggtttcgccaggtttcatcccaacctggtg
gtggggggcacctactcgggtcagatcgtcctgtgggacaatcgtagccacagacggaca
ccggtccagaggactcccctgtcggctgctgcgcacacccaccccgtgtactgcgtcaac
gtagttggcacccagaacgccaacaacctgatcaccgtatctacagacggaaggatgtgc
tcctggagtctggacatgctttctcagcctcaggaaagcatggaactggtgtataataaa
tccaaagcggtggcagtgaccagcatggacttcccgacgggagatgtcaacaactacgtg
gtggggagtgaggagggcactgtgtacactgcgtccagacacggcagcaaggcggggatc
tgtgagatcttcgagggccaccaggggcccgtgacagggatcagttgtcacaacgccgtg
ggcacggtggacttttcccatcttttcatcacgtcctcctttgactggacggttaaactt
tggagcactaagcaaaacaagcctctgtactcttttgaggacaatgccgactacgtctat
gatgtcatgtggtcgcccgtgcacccggcgatcttcgcctcggtggacggcatgggccgc
ctcgacctgtggaacctcaacaacgacacggaggtaccaacagccagcgtgacaatcgaa
ggtgcctcggccctcaacagagtccgctggtcatctggagggaaggaagtggccgtgggg
gactcggaaggacgagtttgggtctacgatactggagagctgtcggtagcccacagtgac
gactggacacgcttcgcacgtacgctgatggagatccgcgcgaaccgtgcggacggcgaa
gacgaggggcctatggagctggcttcatag
DBGET
integrated database retrieval system
