Syngnathus scovelli (Gulf pipefish): 125987010
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Entry
125987010 CDS
T08785
Symbol
nup153
Name
(RefSeq) nuclear pore complex protein Nup153 isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
sscv03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125987010 (nup153)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125987010 (nup153)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125987010 (nup153)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125987010 (nup153)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
125987010
NCBI-ProteinID:
XP_049606991
LinkDB
All DBs
Position
19:complement(8558782..8569026)
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AA seq
1418 aa
AA seq
DB search
MAATGGGKIRSRRYHVASKPYAKTKQQSGLIGRVTDTVKSLVPSWLQNYFKNEEAPEGEA
GGGADGDGGGKEALDVTENCLRPPPNGGREGLPPLLGRHSPEPSTSHTEPSTSRAALNFQ
DYVLSRPPLSHSHLHFSPLETSSPTLGGGLFSHPSTSSAPGPFSTGFSLVKEIKDNLSQH
DDDNISTTSGFSSRASDKDVPASKVASLPQLWTPDADRSISVPQPSQSSLKRPAFNLSVF
GTSANSTLNSTALNSSQLGDSPFYPGKTTYGGVAAVRSARTRPGTPYHAPVRRQIKAKPA
GVQPCGVTSATARRILQSLERMSSPLADAKRIPAAASAASYSTSVDDGDLDVSHLQAKKK
RHDSNLPPVQKLVVPTAVIGSSNRTISFRPSLTPGGPIRTLNQVPKDKPTRQSPPLTDRS
PAGPSQSTIGFGGGVYAMSSMPTPSSSGGGKMKTERKTTRVSSKRMEDDKVTELPDLQPI
SLPISTSALPTFSFSSPLPPIATSAASSVNRVKETAITKATSVSPPCAPFTFSSPIVKAV
PASPPNFSPTAGFTFSAPVTKMGPSMSNGKLSAPVKITTNATTEDFDGGPFKAAKTLKQG
SVLDLLKSPGFASTTVLKSPETSTQSTAGTSSTAAAPSTGLSDLVKAPAGWSCDVCLVQN
KPSVTRCACCMAPQPAAATKDNKTVGPALSEPKGGPNGMSVSSPFSKAPANWECDTCLVF
NKPEAVKCVACETAKAGTGLKASSSLPSATSMFDGFGDTSKKPEGVLESDVGVLQHKVAD
ANPQAGVCAGVPAFSFGSKLKTPKNMWACDTCLLHNKAANVKCVACQAPKPGAQAEPPAS
STTSTFGGFTFGTSNSSSESAPGGFKFGVATSESSSSSSGGFKFGISFGDPSSEAPSKDI
NASLGFKFSTSSEGFKFGMAPGDDIKPEQPAAGFKLGSGDGVSLGAVSLSTESSRSSKAS
FAFGLSKPEEKNSDAATSSAVATPTTASTPTTASIREKGCSNDSTATDATATGAASSMFG
TPATVTPRGAVTFGLLPAEKKPATPGFAFGKPEEKKEASATSTPSAFFFGSTSKDADPAP
AISGGFSFGEPSVPAEQQQPPSFAFGKPADKSDAAISTTANSTFVFGQSAAASDPPKMPF
FFMGSNATTSSSTSSTSSAGLFGSSTQPLPPAPAPTPSPAPTHSTTATHSTFPALILFGQ
GAAADPAASNAPPAKAFVFGQSQDAPSVVPVNSTPPQAAQPFIFGAATTTLPTAPSVNFG
ASAPSATSSAAPNPFLISSSNAAEFGTNQTPAFGSSFSSPFTAAASQTPAFGAKPPATTA
PVFGQQAGAAPAFGATTANSTPGGSFQFGGASAFGATASTGVFNFGSGAAASPALGGGLN
FSQPLAFNIGSSKSFPSSPAGQQTIAGRKIKTAVRRRK
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacgggtggagggaaaatcagaagcaggagatatcacgtcgcctccaaacct
tacgccaagacaaagcagcagtcaggcctgatcggccgagtgaccgacacggtgaagagc
ctggttccctcctggcttcagaactacttcaagaacgaagaggctccggaaggtgaagcg
ggaggaggtgcagacggtgacggcggaggcaaagaagcactggatgtgacggagaactgc
ctgcggccccctcccaacggcggcagagagggactgccccctctccttggacgtcactca
cccgagccaagtaccagtcacacagagccctcgaccagccgggcagcccttaactttcag
gactacgtgctgtcccgcccaccactcagccactcccacctccacttctcgccgctggag
acctcgtcgccgacacttggcggcggcctgttctcgcatccctccacctcatcggcgcca
gggcccttctccaccggcttctccttggtcaaggagatcaaggacaacctttcgcaacat
gatgacgataacatctccaccaccagcggcttctcctcgcgcgcttctgacaaagacgtg
ccggcgtccaaggtggcatcgctcccgcagctttggaccccggacgcagaccggagcata
tctgtgccgcagccctctcagtcaagtctgaagaggcctgccttcaacctgtccgtcttt
ggtacttctgccaattcgacgctgaacagcacagcgctgaactccagccagctgggagat
tcccccttttaccccggcaagaccacatatggcggggtggctgctgtccgaagcgcacgc
acgcgccctggaacgccgtaccatgccccggtgaggaggcagattaaagccaagccggct
ggtgtgcagccctgtggggtgaccagcgccacggcccgacgtatcctgcagtctttagag
cgcatgtccagtcctctggcggatgccaagaggatcccagcagcagcaagtgcagcatcc
tactcaacgtcagtggatgacggcgatcttgatgtgtcacatttgcaggccaaaaagaaa
cggcacgattccaatctcccgccggtgcaaaagctggtggtccccaccgctgttattggc
tcgtcaaaccgcactatctccttcaggcccagtttgaccccaggcgggccgatacgcacg
ctaaaccaggtgcccaaagacaagcccacaagacaatcacccccgctaaccgatcgaagc
cccgcgggcccatctcaaagcacaattgggttcggtggtggagtctatgccatgtctagc
atgcctactcccagcagctccggaggtggtaagatgaagaccgagcgcaagaccacacgg
gtgtcctccaaacgcatggaggatgacaaggtgactgagctgccagaccttcaacccatt
tcgcttcccattagcacatctgccttgcccaccttcagcttctcctccccgttgcccccc
attgctacctccgccgcctccagcgtcaaccgtgtcaaggaaacggcaataactaaggcc
acttccgtttcacccccctgtgcaccctttacattctcctcgcccattgttaaagcggtc
cccgctagtcctcctaacttctcccctacagctggcttcacattcagtgcacctgtaaca
aaaatgggcccttccatgtcaaatgggaagctaagcgcgccagtgaaaataacgacaaac
gcaaccacagaagactttgatggtggccccttcaaagcagccaagacactgaagcagggc
agcgtgctggacctcctcaagtcgcccggctttgcttcaacgaccgtgctgaagtcgccc
gagacctccacacagtccactgctggcacctcctccaccgctgccgccccctcaacaggc
ctcagtgacttggttaaagccccagccgggtggagctgcgacgtctgcttagtgcaaaac
aagccatcggttacaaggtgcgcttgctgcatggctcctcagcctgccgccgccaccaag
gacaataaaacagtggggccggcactttcggagccaaagggcggccccaatggcatgtcc
gtcagctcgcccttctctaaagcgccggccaattgggagtgcgacacgtgtctggtcttc
aacaagcccgaagctgtcaaatgtgtggcctgcgagaccgccaaggccggcacggggctc
aaggcctcgtcctctctgccctccgccacctccatgtttgacggatttggagacacgtca
aagaaaccagagggagtgttggagagcgatgttggcgtgctacagcacaaggttgcagat
gcaaaccctcaagccggtgtgtgtgcaggcgtgccggcattcagcttcgggagcaagttg
aagacgcccaagaacatgtgggcctgcgacacatgtctactgcacaacaaggccgccaat
gtcaagtgcgttgcttgtcaggcccccaaacctggagcgcaggccgagcccccagcatct
tctactacctctacttttggaggattcaccttcggcacatccaacagttcgtcggagtct
gcgcccggagggttcaagtttggtgtggccacgtcggaatcctcctcgtcctcatcgggt
ggattcaagtttggcatttcgttcggtgacccctcgtcagaagccccttcaaaagacatt
aatgcctctctggggttcaagttcagcacctcatccgagggcttcaaatttggaatggcg
cccggggatgatataaagccagagcagcccgcggctggtttcaagttaggatccggcgat
ggggtctcgttgggggcggtctcattgagcacggaaagcagcagatcttcgaaagcgtcc
tttgcctttggcctttccaaacctgaggaaaaaaactcagatgctgccacctcctcggct
gttgccacgcccacgactgcttccacgcccacgactgcttccattcgggagaagggctgc
agcaacgacagcacggcaactgatgccacggcgaccggcgctgcctcgtccatgttcgga
acgcccgccaccgtcacgccacgcggggcagtgacatttggattgctgcccgcagagaag
aagcccgccacccccggatttgcattcgggaagccagaggagaagaaggaggcatccgcc
acctcgactccatctgccttcttctttggcagcaccagtaaggacgccgaccccgcgccg
gccatttcggggggcttctctttcggtgagccaagtgtgccggcggagcagcagcagccg
ccttcttttgcttttggcaagccagctgacaagagcgacgcagcaatttcaacaactgca
aattccacgtttgtgtttggacaaagtgctgcagcttctgatcctcccaaaatgccattc
ttcttcatgggaagcaacgccaccactagcagcagcacctcctccacctcgagtgccggg
ctctttggcagcagcacccagcctctccctcctgctcccgcccctactccctcccccgct
cccacccattccaccactgcaactcacagcacttttcctgcactgatcctttttggtcag
ggcgccgcagctgaccccgcagctagcaacgcccccccagccaaagccttcgtctttggg
cagagccaagatgctccgtcggtcgtgcccgtcaactcaaccccgcctcaggcagcgcag
cccttcatcttcggcgcggctaccactacacttcccactgcgccttctgtcaactttgga
gcatctgcgccatctgcgacatcctctgcagctcccaaccccttcttaatcagctcctcg
aatgccgcagagtttggaaccaaccagacaccggcgttcggttcgtctttcagctcgccg
ttcacggcggctgcttcgcagacccctgcgtttggtgccaaaccccctgccaccaccgcg
cccgtctttggccagcaggccggcgccgcgcccgcctttggcgccaccactgccaattcc
acgccaggtggaagctttcagtttggaggagccagcgccttcggcgccaccgctagcacg
ggagttttcaatttcggttctggggcggcagcgtctcctgcacttggcggcgggttaaat
ttttcacaacccctcgctttcaacattgggtcgtccaaatccttcccatcgtctcccgcc
ggccagcaaacaattgccgggcgcaagatcaagacagctgtgcgacgtcgaaaatag
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