Syngnathus scovelli (Gulf pipefish): 125987037
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Entry
125987037 CDS
T08785
Symbol
tdp2b
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 2 isoform X1
KO
K19619
tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125987037 (tdp2b)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
125987037 (tdp2b)
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Gene cluster
GFIT
Motif
Pfam:
UBA_4
Exo_endo_phos
UBA_8
Exo_endo_phos2
TAP_C
Motif
Other DBs
NCBI-GeneID:
125987037
NCBI-ProteinID:
XP_049607066
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All DBs
Position
19:complement(8729313..8735463)
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AA seq
362 aa
AA seq
DB search
MASTSDAGDEEERRTRLCEEFAGLTSTDNIVAQCYLAETDWDMERALNRFFDADMEKVFE
ESFSHQEPPTKNQKVEEAKAPAAVSIDLMADSPGSSPQPLKDIDSGSRLTLISWNVDGLD
TENLAERARGLCSYLVLYTPDVVFLQELIPPYVEYLKKRAVSYLIIEGGEGGYFTGMMLK
KTSVKLLESQIVPYPTTRMGRNLLMAQVTLRGAKVWLMTSHLESCKEHSGERMKQLREVT
RQMQEAPDDVSVLFAGDTNLRDAEVVKVGLPTDVCDVWERLGRQEHCRYTWDTHANSNKN
LPYTSRCRFDRVLLRPAAHPRAIRLDPDRMVLVGLEKLSCGRFTSDHWGIYCSLSTTVNH
TS
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacgtccgacgccggggatgaagaagagaggcgaactcgactatgcgaggag
tttgccgggttaacgagcactgacaacatcgtggcgcagtgctacttggcggagaccgac
tgggacatggagagagcgttgaaccgtttcttcgatgctgacatggagaaagtgtttgag
gagtcgttttcacaccaggagcctccaaccaagaaccaaaaagtggaggaggcaaaagct
cctgcagcagtaagcatcgatttaatggcagacagtcccggctcgtcgcctcaacccctc
aaggacatcgacagcggctcaagactgacgctcatctcatggaacgtggacggtctggac
acagagaacctggcggagcgtgccagaggcttgtgctcctacttggtgttatacactcct
gatgtggtgttcctgcaggaactcattccgccttacgtagagtatttgaagaaacgcgct
gtcagctacttgatcattgaaggtggcgagggcggctactttaccggcatgatgctgaag
aagacgagtgtcaagttgctggaaagccaaatcgtgccttaccccaccactcggatggga
cggaatctgctcatggcgcaggtgacgttgaggggcgcaaaggtatggctgatgacgtcc
cacctggagagctgcaaggagcattcgggtgagcgtatgaagcagctgcgcgaggtgacg
cggcaaatgcaggaggcgcccgatgacgtcagcgtgctgttcgctggcgacaccaacctg
cgtgacgccgaggtggtgaaggtgggcctgcccaccgacgtgtgtgacgtttgggagcgc
ctcgggcgccaggagcattgccgctacacgtgggacacccatgccaactccaacaagaac
ctgccctacacctcccgctgccgcttcgaccgcgtgctcctgcggccggccgcccaccct
cgagcgatccgcctggatcccgaccgtatggtcctggtgggcttggagaagctatcctgc
ggccgcttcaccagcgaccactggggcatctactgcagcttgagcaccaccgtcaaccac
acatcttaa
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