KEGG   Syngnathus scovelli (Gulf pipefish): 125987226
Entry
125987226         CDS       T08785                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03082  ATP-dependent chromatin remodeling
sscv03083  Polycomb repressive complex
sscv04110  Cell cycle
sscv04330  Notch signaling pathway
sscv04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125987226
   03083 Polycomb repressive complex
    125987226
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    125987226
   04350 TGF-beta signaling pathway
    125987226
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    125987226
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sscv03036]
    125987226
Enzymes [BR:sscv01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     125987226
Chromosome and associated proteins [BR:sscv03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     125987226
   HDAC complexes
    Sin3A-HDAC complex
     125987226
    BRAF-HDAC complex
     125987226
    REST complex
     125987226
    SHIP complex
     125987226
    MiDAC complex
     125987226
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     125987226
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125987226
  Chromatin remodeling factors
   NuRD complex
    125987226
SSDB
Motif
Pfam: Hist_deacetyl Glypican
Other DBs
NCBI-GeneID: 125987226
NCBI-ProteinID: XP_049607422
LinkDB
Position
19:5073101..5076688
AA seq 483 aa
MAMSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
GEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVDYMKSFNLPLLMLGG
GGYTIRNVARCWTYETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTDEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSADEDDEDPDKRISIRAHDKRIACDEEF
SDSEDEAEGQGGGRRNATNHKKAKRVKKEEERDGEEKKDVKEDEKEDEKMDTSVAKEEVK
TTT
NT seq 1452 nt   +upstreamnt  +downstreamnt
atggcgatgtcgcaaggaacaaagaagaaagtttgctattactacgatggtgacgtggga
aattattattacggtcaaggccaccccatgaagccccacaggatccgcatgacacacaac
ctgctcctgaactatggactgtataggaagatggagatctataggccacacaaagctagc
ggcgaggagatgaccaagtaccacagcgatgattatatcaagttcctcaggtccatcaga
ccggacaacatgtcagaatacagcaagcagatgcaaagattcaacgtgggagaggattgt
ccggtgtttgacggcctgtttgagttctgccagctctccacaggcggctccgtggcgggg
gcagtgaagctgaacaagcagcagaccgacattgccgtcaactgggcgggaggactccac
cacgccaagaagtcggaggcgtccggtttctgctacgtcaacgacattgtcctcgccatc
cttgagttgctcaagtaccaccagcgcgtgctgtacatcgatatcgacatccatcacggc
gatggcgtggaggaggctttctacaccaccgaccgtgtcatgaccgtctcctttcacaaa
tatggcgagtacttccccggcaccggtgaccttagggacatcggcgccgggaagggaaag
tactacgctgtgaactatccgctgagagacggcatcgacgacgagtcttatgaggccatc
ttcaaacctatcatggctaaagtgatggagatgtaccagccaagtgcagtggtcctgcaa
tgtggcgctgactccctgtcaggagacagacttggctgcttcaacctcaccattaaaggt
cacgccaagtgcgtggattacatgaagagcttcaacctgcctcttctaatgttgggcggg
ggcggctacaccatccgcaacgtggcgcgctgctggacctacgagacggcggtggcgctg
gactgctccatccccaacgagcttccctacaacgactactttgaatacttcggccctgac
ttcaagctgcacataagcccgtccaatatgactaaccagaacacggacgagtacctggag
aagatcaagcagcgcctcttcgagaacctgcgcatgctaccgcacgcgcccggcgtccag
atgcaggccataccggaggacgcgccgcaccctgacagcgccgatgaggatgatgaggac
cctgacaaacgcatttccatccgggcacacgacaagaggattgcgtgcgatgaggaattc
tcagactctgaggatgaggccgagggacagggtggcggccggcggaatgcgaccaatcat
aaaaaggccaagcgggtgaagaaggaggaggagcgcgatggggaggagaagaaagatgtg
aaggaggatgaaaaggaggatgagaagatggatacttcagttgcaaaagaagaagtgaaa
actactacttga

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