Syngnathus scovelli (Gulf pipefish): 125987238
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Entry
125987238 CDS
T08785
Symbol
nup42
Name
(RefSeq) nucleoporin NUP42
KO
K14321
nucleoporin-like protein 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125987238 (nup42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125987238 (nup42)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125987238 (nup42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH_4
zf-CCCH
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
125987238
NCBI-ProteinID:
XP_049607443
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All DBs
Position
19:5373161..5375231
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AA seq
413 aa
AA seq
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MTVCNFFLQGRCRYGDKCWNEHPRGGGGGYNNYNRSSGPQHPRGGGGYGNKVWVNPSQQK
GGFNQQQHSNLRNHRGDTGQDVKSSDFSFSSQNRFSALGNNNNFERERRGGGGREATVTG
EEDDEQKLEIIQSDMKAWESSGQWGFSCYGSFKTQLSGFADLSPEELRLEYYSTKASGDM
QSYVSGVNLLLSQWRNRIQELLRMNPVTRAALLAELKNPSHQASSSGFGSTASGFGSSSF
GLGSTGFGAAPVQASSTFNFAAPAGGFGSSPAPTSKPTFGSAISAPTGFGSPSSSSAFGS
SAPSAASFSFASPSSNQPAASSSGFGSAAGFSFSSTATNNNKSSFGSGFGSEAPAGSLFG
QSSSSTSASEGASDMLFSPKSELSPEELDQFKAQRFTLGHIPLKPPPAEMLRV
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgtgtaacttttttctccaaggccgttgtcgttacggtgataaatgttggaac
gagcacccgagaggaggtggtggaggatataataactataatcgctcgtcgggtccgcag
cacccccgaggaggtggagggtatggcaacaaggtttgggtgaatccctctcagcagaaa
ggaggcttcaaccagcaacagcactccaacctgaggaatcacaggggcgatacaggacag
gacgtgaagagctccgattttagtttctcttcccaaaacagattttcggcactcggcaac
aataacaactttgagagagaacgaaggggaggagggggaagagaagcaacggtaactggt
gaagaagacgatgaacagaaactggagatcattcagagtgatatgaaggcttgggagagc
tcgggccagtggggcttctcctgttatggtagcttcaagacacaattatctggttttgct
gatctatctccagaagagcttcggctggaatattattctactaaagcgtcaggagacatg
cagagttatgtgagtggtgtcaatctgttgctcagtcagtggagaaacagaatccaggag
ctcctgcgaatgaatccagtcactcgtgcagctttgcttgcagaactaaaaaatccgtca
catcaggcatcatcaagtggctttggctcaacagcttccggatttgggtcatcttcattt
ggtttgggtagcacaggatttggagcagcaccagtccaagcaagcagcactttcaatttt
gctgctccagcaggtggatttggctcctcaccagcaccaacatctaagccaacttttggc
agcgccatctcagccccaactggttttggttccccctcctcgtcgtctgcttttggttca
agcgctccttcggccgcatcgttctccttcgcttctccttccagcaaccagccggcggct
tcatcttcaggatttggctcggccgcaggcttcagcttctcctccactgccaccaataac
aacaaaagctcatttggaagcggttttgggtccgaggcacctgcgggaagtttattcgga
caatcgagttcctccacaagcgcctctgaaggtgcctcggacatgttgttctcccccaag
agcgaactgagccccgaagagctggatcagtttaaagcgcagaggtttactcttggacat
attcccttgaagcctcctcctgctgaaatgctccgggtttaa
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