Syngnathus scovelli (Gulf pipefish): 125987379
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Entry
125987379 CDS
T08785
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X2
KO
K08133
collagen type XIV alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sscv00535
]
125987379
Proteoglycans [BR:
sscv00535
]
Extracellular matrix (ECM) proteoglycans
Others
125987379
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_PBP1
Fn3_VIN3
Ig_ANOS1
VWA_3
Fn3_SaeA_4th
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
125987379
NCBI-ProteinID:
XP_049607666
LinkDB
All DBs
Position
19:7407704..7419949
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AA seq
1828 aa
AA seq
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MTSRHWMVTLGFLFLLRAPPARAQGRVSSPKRFRSKVLSPTELLVSWKEPRGPLDGYVVA
YSTQPGDGETEVDVAKEDTRLLIDNFDASRDYAFKVFALRGELRSKPLVGGHQAEPSGRE
RLESQLPHDGAPTHANAITEGEEPFTCSTPAAADVVIMVDGSWSIGRSNFHLVRSFLENL
VRAFEVDEDRTRVGLVQFSGEPRLEWHLNRHQSKAAVLDAVRNLPYKGGNTLTGLALSFV
LENSFKAESGSRAHVPKVAILITDGKSQDDVVPPAQNLRNAGIRVFAVGVKNADEEELKA
IASPPADMHVYNVAGFDVMSDIVGVLTRSVCRTVEQLAEAGGGAPPPEGLAPPRDLVTSD
VTARSFRVTWTPPPTGQVERYRVVYYPANSGRPEEKVVPGSEHSVLLDHLSSLSEYQVAV
FAVYRSTASEALRGSATTLALPTVEHLDLLEPTHDTMRVRWTTAPAASGYMILYAPLSQG
ELDDEKEVKVASDVEEAELEGLTPSTEYTVTVYAMYGEEASDPITGQLSTRALLPATNLR
LTDVGHSSARLSWDSPSRKAMGYSVFYTRSDGVESNQVEVGRETNWLLSNLSPQTEYTVG
VVATYDQGQAEPATQSFLTRNVPEPTDVRSHDTSTAGFQVSWQTPTDDVALYRLSWTPAD
GGHRGDGDSGEVLLNTNTNTYTLTGLRPSTEYEVLLSAIYENEVESEQVVLLEYTVERTT
TVAMTTTSIAVPRDGVRGMTVDDRTTSSLRVSWQHLDAHDVRHYRLSYSSATGNQETRSL
PSTQSSLVLQPLMPDTQYKVTVTPVYLDGDGATVTATGRTFPLSPPGNLRVSEEWYNRFR
ISWDLPASPTTGFRVVYQPLSAPGPALETFVGRDVSTMMIVNLLSDTEYGVKVLASYSGG
SSEALLGRARTQRLVVSDLRIYQRSADGLCARWQPQRHGAAYRVVIQSANGGHVEEAKLS
AGSITHCFNNLRPDMLYKISVYAQLQDGSQGPAVTAAAKTQAASTPAPTVPPTTISLPTV
PPAKEVCKAAKADLAFLVDGSWSIGDDNFLKIIGFLFSTAGALDRIGPDGTQVAIAQFSD
DTRTEFALSAYDHKERLLEAINKISYKGGNTQTGRAIRHMKDNIFTAEGGVRKGVPKVLV
VLTDGRSQDDVSKVSEEMRMEGFVVFAIGFADADYAELVSIASKPSERHVFFVDDLDAVK
KIEEKLVTFVCEAATATCPSVAMHGSGTTPGFRMMELFGLLGERYSSLPGVSMVPGTFNA
FPCFRLHSDALLAQPTRFLHPEGLPSDYTIALLFRLLPNTPQEPFALWEVLDQDQQPLVG
VILNNGGKTLTFFNNDYRGNFQTVTFEGPHVKKLFHGSFHKLHVVISKTSASVLVDCQDV
STKTIEAAGNISTDGTEVLGRIVRSRGNKDNSAPFELQMFDIVCSTSWASRDQCCELPSL
RNEAQCPAMPKACTCTQDSRGPAGPAGPPGGPGTRGARGERGVPGPVGPAGAVGEPGVPG
PQGAPGPLGPSGRSIRGSPGAPGEPGQKGESGQRGLQGVAGRVGTPGREGLPGPRGLPGK
DGPPGRPGSSGTIGSPGAPGAPGNTGAPGKHGELGPPGPSGTKGDKGERGDLQSTATVQT
IARQVCEQLIQSHMAQFNTLLNHAPSPSVTIRTVPGPPGEPGRNGSPGPQGEQGPSGRPG
FPGQNGQNGQPGERGPPGERGEKGSAGVGVQGPRGPPGPPGAPGQGRSGSPGPSGRPGNP
GAPGRPGVPGPVGSAGPPGYCDQNSCVGYNVGVQLPSNIFPNYGEAEEEDPYRYYQPDYP
PPRPVQDPELDTERSELELNSQDEGVGP
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacgccactggatggtcactttgggcttcctgtttttattgcgcgccccgcct
gcgcgagcacaaggacgagtgtcttccccgaaaaggttccggagcaaagtactgagtccc
accgagcttttggtgtcctggaaggaacccagaggtccgcttgacggatacgtggtggcc
tacagcacacagcctggcgacggggagacggaggtggatgtggccaaagaggacacccgg
ctgctgatcgacaactttgatgccagtcgagactacgccttcaaagtgtttgccctgaga
ggggagctaagaagcaaaccgctggtgggcggacaccaagccgaaccctcaggacgagaa
aggcttgagagtcaacttccgcatgatggcgcccccacgcacgccaacgccatcactgag
ggtgaggagccgttcacgtgcagcacgccggccgccgcagatgtggtgatcatggtggat
ggctcctggagcattgggcgcagcaacttccacctagtcagaagcttcctggagaacctg
gtgcgggccttcgaagtggatgaggaccgcacgcgcgtgggcttggtgcagttcagcggc
gagccgaggctggagtggcacctgaaccgtcaccagagcaaagcggccgtgctggacgcc
gttcggaacctgccgtacaaaggcgggaacaccctgacaggtctggcgctgagcttcgtc
ctggagaacagcttcaaagcggagtctggatcccgagctcacgtccccaaagttgccatc
ctaattacggacggaaagtcccaagatgacgtggtgccccccgcgcagaacctgaggaac
gccgggattcgagtgtttgctgttggcgtgaagaacgcggacgaggaagagctgaaggcc
atcgcctcgccacccgccgacatgcatgtctacaatgtggccggctttgatgtgatgagt
gacatcgtgggcgttctgaccaggagcgtgtgccgcacggtggagcagctggcagaggca
ggcggtggcgcccccccgcccgaaggcttggcccctccccgcgacctggtgacctccgat
gtcacggctcggagtttccgcgtgacgtggacaccgccgccgactggtcaagtggagcgc
taccgtgtggtttactacccggcgaacagtggcaggccggaggagaaggtagtgccaggg
tcggagcatagcgtcctgctggaccacctcagttctctgagcgaataccaggtggccgtg
ttcgccgtctaccgcagcaccgccagcgaggcgctgagaggcagcgccaccacgctggcc
ttgcccaccgtggagcacctggacctgttagagcccacccacgacaccatgagggtccgc
tggacgaccgccccggctgcatcaggatacatgatcctttacgcgccgctcagccaggga
gagctcgacgacgagaaagaggtgaaggtggcgtccgatgtggaagaggcggagctggag
ggtctgacaccgtcaacggagtatacggtgacggtgtacgccatgtacggagaggaggcc
agcgaccccatcaccggccagctcagcacgcgggcgctgctcccggcgaccaatctgcga
ctgacggacgtgggccacagctctgcccgactcagctgggactccccgtccaggaaggca
atgggctacagtgtcttttacacccgcagcgatggtgtggaaagtaaccaggtggaggtg
ggccgcgagaccaactggttgctaagcaacctgagccctcagactgagtacacagtgggc
gtggttgccacctacgaccaggggcaagcagagccggccacgcagagcttcttaacacgc
aacgttccagaaccaacggacgtgagaagccatgacacctctacggccggcttccaggtg
tcgtggcagacccccactgacgacgtggcgctctaccgcctcagctggacgcctgcagac
ggtggccaccgcggcgacggtgacagcggggaggtgctgctcaacaccaacacgaacacc
tacacgctcactggactccgaccctcgaccgagtatgaggtcctcttgagcgccatctat
gagaatgaggtggagagcgagcaggttgtgctgctggaatacacggtggagagaacgacc
actgttgctatgacaaccaccagcattgcagtgcctcgtgacggcgtgcggggcatgacc
gtggatgaccggaccacctctagtctgcgggtgtcatggcaacacttggacgcccacgac
gtccgccattaccgcctcagctacagcagcgcgaccggaaaccaggagacgaggtcgctg
ccgtccacccagagcagtttggttttgcagccgctgatgcccgacacccagtacaaagtg
actgtcacgcctgtttatctggatggagacggcgctacggtcacggccacgggacgcacg
tttccactgtcacctcctgggaatctgcgcgtttccgaggaatggtacaaccgcttccgg
atcagctgggaccttcccgcttctcccacgacaggcttccgtgtggtgtaccagccactg
tcggccccaggacctgccttggagacctttgtgggccgggacgtgagcaccatgatgatc
gtcaacctgctaagtgacaccgagtacggcgtcaaagtcctggcatcttacagtggcggg
tccagcgaggcgctattgggccgggcccggacgcagcgcctggtcgtgagcgacctgcgc
atttaccagcggagcgccgatggcttgtgtgctcgctggcagccgcagagacacggcgct
gcctaccgggtcgtcatccagtccgctaacggtggtcacgtggaggaagctaagctgagc
gcaggatccatcacccactgtttcaacaacttaaggcccgacatgctgtacaagatcagc
gtttacgcgcagctgcaggacggaagccaaggccctgcagtgacggccgccgccaaaact
caagccgcttcaacccctgctcccaccgtgccgccgaccaccatctcgctccccacagtt
ccccctgccaaagaagtctgcaaggcagccaaggctgacctggccttcttggtggacggt
tcctggagcatcggcgacgacaacttcctgaagatcatcggcttcttgttcagtaccgcc
ggggcgctggaccgcattgggcccgacggcacacaggtcgccatcgctcagttcagcgat
gacacgcgcaccgagtttgccttgagcgcctacgaccacaaggagcgcctcctggaggcc
atcaacaaaatctcctacaagggaggaaacacccagacaggtcgtgcgatccgccacatg
aaggacaacatcttcacggcggagggaggagtcaggaagggagtccccaaggttctggtg
gtcctcactgatggccgatcgcaggatgacgtcagcaaggtctcagaggagatgcggatg
gaaggctttgtcgtcttcgcaatcgggttcgccgacgccgactacgctgagttggtgagc
atcgccagcaaaccgagcgagagacatgtcttttttgtggatgacctggatgctgtcaag
aagattgaagagaagctggtgacctttgtgtgcgaagctgccacggccacatgtccctcc
gtggccatgcacggcagcggcaccactcccggtttccgcatgatggagctgtttggactg
ctgggggagcgctacagcagcctacccggcgtttccatggtacccggcacctttaacgca
ttcccgtgctttcgcttgcacagcgacgccctcctggctcagccaaccaggttcctccac
ccagaaggtcttccctcggactacaccattgcgctgctgtttcgcctgctgcctaacact
ccccaggaaccttttgcactctgggaggtcttggaccaggatcagcagccactggtgggc
gtcatcctgaacaatggagggaagacgttgaccttcttcaacaatgactacagagggaac
tttcagactgtcacctttgagggtccgcacgtcaagaaacttttccatgggagctttcac
aagctccacgtggtgatcagcaagactagcgccagcgtgcttgtggactgtcaggacgtg
tccaccaagaccatcgaggcggcaggaaacatcagcacggacggaacggaggttctgggc
aggatagttcgctccagaggaaacaaggacaactcggcgccatttgagctccagatgttt
gacattgtgtgcagtacctcgtgggcctccagggatcagtgctgtgaacttcctagtttg
cgcaacgaagcccagtgtcctgccatgccgaaggcctgcacctgcactcaggatagcaga
ggccccgcaggccctgccggaccccctggtgggccaggaacacgaggagcccgaggtgag
cgtggagtgcctggtccagtggggcctgctggagccgtaggtgagcccggcgtgccagga
ccccagggagccccaggaccactagggcccagcgggcgctccatcaggggttccccgggt
gctccgggggagccaggacagaaaggagagtcggggcaacgaggtctgcagggcgtggcc
ggccgagtgggcactcccggcagagaaggacttcccggccccagagggctgccgggcaaa
gacggcccacccggccgaccgggctcctctggaaccattggaagtcctggagccccaggg
gcccctggaaacacaggtgccccgggaaaacacggagaactgggaccgccgggtccaagc
ggaaccaagggcgacaaaggcgaacggggcgacctgcagtccacggccacagtccagacc
atcgccaggcaggtgtgtgagcagctgattcagagtcacatggctcagttcaacaccctc
ctaaaccacgcgcccagcccatctgtgaccatccgcactgtcccgggacctcctggagag
cccggtcgaaatggatcaccagggccccaaggggaacagggcccctctggaaggcctggt
ttccccggacaaaatggacagaacggccagcccggagaacgaggtcccccaggtgaaagg
ggtgaaaagggttctgctggtgtgggagttcagggccctagaggaccgccaggacctcct
ggtgctccaggccaaggcaggtccggcagtccaggcccgtccgggagacctgggaatcca
ggagcaccaggacgtcccggggttccaggcccagtgggctccgccggtcctccgggttac
tgtgaccagaattcctgcgtgggctacaacgttggagtccagctgccgtccaacattttc
cccaactacggtgaggcagaggaggaagacccgtaccgctactaccagcctgactacccg
cctccgcggcccgtccaggacccggagctggatacggagcgttctgaactggagctgaac
tcccaagatgagggggtggggccatag
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