Syngnathus scovelli (Gulf pipefish): 125987528
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Entry
125987528 CDS
T08785
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125987528 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125987528 (skic2)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125987528 (skic2)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125987528 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
125987528 (skic2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
125987528
NCBI-ProteinID:
XP_049607911
LinkDB
All DBs
Position
19:1908414..1915698
Genome browser
AA seq
1243 aa
AA seq
DB search
MDRINVPPPGPMDLPLSLLEMGCSGRFELITHPSPGLPFPPQTTLPNGLPPTSLSLEAEV
KKQFLQDPGWLPLHDTDFAFQRFLKVTNRKVNVDSLLNCTSSSLNSGLSVIRDPTTGMLL
DFTEVSLENTGLSAKNSLSLQRKPGPPSESLRGSNTNYPFLPGGMEELTLDQIKTKSELE
QDIDFENDLLQVPPGFKAGMDFTDRGTKVAKPEVNLMSLLSTSDDVIDLEAEAEAKEESQ
GHEEAVKLPRTNSLEDLGIQDASSSSSQSGKGKSNQSEKPEETKKWAIPVDISSPCADFH
KRIPHPAFKWPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTI
YTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVIRDL
EWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKKHIYV
ISTLKRPVPLEHYLYTGNNTKTQKEMFLLLDATGNFLTKGYYAAVDAKKERTSKYAQSFG
TKTPSQNTTASQDRAVWLTLLHFLTQRQQTPVVAFTFSRTRCDDNARSLDSMDMTTSIEK
AEIHSFFQKSLSRLRGGDRQLPQIVLMRDLLKRGVAVHHSGILPILKEVIEMLFSRGLVK
VLFATETFAMGVNMPARTVVFDSIRKHDGSGFRNLLPGEYIQMAGRAGRRGLDATGTVII
LCKAGVHEMSELHVMMLGKPTTLHSQFRLTYTMILNLLRVEALHVTDMMRRSFSENHRDT
QAHEKRISHLKEILSTLPVAASEGQLSDLLPYYHTVTELRTTREILQRAILESVNGLKAL
SVGRVVVVNNKQHVNSLGVILQVSSDAVNRTFTTLILCDKANEEAEGNGGDSRAPPHLYN
TALFIPEGPCSHTVQKLKPEDITGITLKTLKVIPDRIIDNYHKRQQPRFRTEPPGQAIST
ATQELLRLAEANAGGIVTLDPVNDLQLKNVDVVEASMRLRVLQDSLREFSCIHSPTFAEQ
FAKVQERMSVQEELDKLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSGGAVQLKGRVACQ
ISSHELLLTELLFENALSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGIDRVLSVAQ
RIGELQRDCGLPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCIQRL
DEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgtaccccctccaggtcctatggatcttcctctgtccttgttggag
atgggatgctctggcaggtttgaactcatcacacatccctccccgggcttgccttttcct
ccacagaccacgctccccaatggacttccccccaccagtctgagcctggaggctgaagtc
aagaaacaatttttacaagatcctggctggcttcctttacatgacacagactttgctttc
caaaggtttctaaaagtgacaaacagaaaggtgaatgtcgactctctgctcaactgcact
tcgtcttcgttaaattctggactctccgtcatccgagatccaactacagggatgctgctg
gatttcacagaagtttcattggagaacacgggtctttcggcaaagaactcgttgtcatta
caacgcaaacctggacctccttccgagagcctaagaggaagcaacacaaattaccccttc
ctgcctggtgggatggaggaacttactctggaccaaatcaagactaagtcagaactggaa
caggacatagattttgagaatgatttgctccaagttcctcctggttttaaagctggaatg
gacttcactgatagaggaactaaagtagcaaaacccgaagtcaacctcatgtcactgctg
tcaacctctgatgatgtcatcgacttggaggctgaggcagaagcaaaggaggaaagccaa
ggtcatgaagaggccgtcaaacttccgaggacaaacagccttgaagacctaggcatccaa
gatgcttcgtcctcctcctctcagtccggcaagggaaagtcaaaccagagtgagaaacca
gaagaaacaaaaaaatgggccattcccgtcgacataagttcaccctgtgcagatttccac
aaacgcattcctcatccggcttttaagtggccgtttgagctagatgttttccagaaacaa
gccatattacgactggaggctcacgactctgtgtttgtggcggcgcacacgtcggctggc
aaaacggtggtggctgaatacgccattgctctctcacagaaacacatgaccaggaccatc
tacacttcccccatcaaagctttgtccaatcagaagttcagagactttaagaccaccttt
ggggatgtgggtctcctcacaggtgatgtccagctcagtccagagtcttcgtgtctcatc
atgaccacggagatcctcaggtcaatgctttacaacggttcagaggtcatcagagatttg
gagtgggtcatatttgatgaggtccattatattaatgatgcagagagaggagttgtttgg
gaagaagttctcatcatgttacctgaccacgtaagcattattctcctgagtgccacagtg
ccaaacgctctggagttcagcgaatggatcggacgcattaagaagaagcacatttacgtg
atcagcacattgaagcggcccgtgcctttggagcattatttgtacactggaaacaacaca
aagacccagaaagagatgttcttactattggatgctaccggaaacttccttacaaaaggt
tattacgcagctgtggatgccaagaaagagcgcaccagcaaatacgcccaatcttttggc
accaaaactccatcgcagaacaccacagctagtcaagaccgagcggtgtggctcaccctc
ttgcacttcctgacccaacggcagcagacccccgtggtggcgttcaccttctcacgcacg
cgctgtgatgacaacgcccgttcgctggactccatggacatgaccacgtccatcgagaag
gctgagattcactcgttcttccaaaagagcctgagtcgactcagagggggggacagacag
ctgcctcagattgtactcatgagggatctgctgaaaagaggagtagcagtccatcatagt
ggaatcctgcccatattgaaggaggttatcgaaatgctcttctcaagaggcctcgtaaaa
gtgctgtttgcaaccgagacgtttgcgatgggagtaaacatgcccgccaggactgtggtt
ttcgacagcatccgaaaacatgatggaagcggctttaggaatcttctacccggtgaatat
attcaaatggcgggcagagcaggcaggagaggtcttgacgccacgggcacggtcatcatc
ctgtgtaaagctggcgttcacgaaatgtcagagcttcatgtcatgatgctgggcaagccc
accacgcttcactcgcaattccgactgacttacaccatgattctcaacctgctgcgagtc
gaggctctccatgtgaccgacatgatgaggagaagcttttcggaaaaccacagagacact
caggcacatgaaaagaggatcagccaccttaaggagatattgtccactctgcccgtcgcc
gccagcgagggccagctatctgatttgctgccgtactaccacacagtgacagagctacgg
accacgagagaaatcctccagcgtgcaattctggagtcggtcaatgggctgaaagctttg
tccgtgggccgggttgtggtggtgaacaacaagcagcatgtcaactccctgggagttatc
ctgcaggtgtccagcgatgcggtgaatcgcaccttcacaacgctcatcttatgcgacaaa
gccaacgaggaagcggaaggaaacggcggcgacagtcgagctcctcctcatctctacaat
acggcgctttttatccctgaaggtccatgcagccacacggtgcagaagctaaagccagag
gacatcaccggcatcacattgaagaccctcaaagtgattcccgacaggatcatcgacaac
tatcataagagacaacagccccgatttaggaccgaaccacccggtcaagccatctccacg
gcgacgcaagagctcctgcgattggccgaggctaacgcaggcggcatcgtcaccctggac
ccagtcaacgacctccagctgaagaacgtcgacgtggtcgaggcctccatgcgtctccgc
gtgctgcaggacagcctgcgagaattcagctgcattcactcgccgacttttgcggagcag
tttgctaaagttcaggagaggatgagcgtacaagaggagctggataaactgcttttcctg
gtctcagatcagtcattatctttgctgccagagtaccatcagaggatcaaggtgctccag
tcgcttcaatacgtggacagcggcggcgccgttcagctcaaaggccgggtggcttgtcag
atcagcagccacgagcttctgctcaccgagctgctgtttgagaacgctctgagtccgctg
gcgcccgaagagagcgccgccctgctgtcctgtttggtcttcacgcagaacacgcaagtg
gagccgcacatcaccaatactttacaggagggtattgatcgcgtgttgtcagttgcacag
cgcataggagagttacaaagggattgcggcttaccacaaacagcggaagaatttgtgggc
cagttcaagtttggcctgactgaggtggtctactgctgggccagaggcatgccgttcgct
gagatcgcccagctgacggacgtccaggagggcacggtggtgcgctgcatacaacgtctg
gatgaggtgctgaaggaggtgcgccaggccgctcgcatcgttggagactcggtgctggga
agcaagatggagaaggcctcgctcgccatccggagagacattgtttttaccgcctccctc
tacacccactga
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integrated database retrieval system
