Syngnathus scovelli (Gulf pipefish): 125987802
Help
Entry
125987802 CDS
T08785
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
125987802
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sscv02000
]
125987802
Transporters [BR:
sscv02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
125987802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
125987802
NCBI-ProteinID:
XP_049608255
LinkDB
All DBs
Position
2:12500098..12509545
Genome browser
AA seq
705 aa
AA seq
DB search
MATNGTKTDGQVTELNEVAANNDKPKSLDIKPEKAKKELPARETWGGKFDFLLSCVGYAI
GLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGMPLFLLECSLGQYTSIGGLGVWKLAPMF
KGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTADLPWSSCNNLWNTEKCYTNYSIADT
TNLTSAVVEFWERNVHEMTDGLEKPGQLRVPLAITLAIAWVLVYFCIWKGVSWTGKVVYF
SATYPYFMLFILFIRGVTLPGAREGILFYITPDFEKLKESEVWLDAATQIFFSYGLGLGS
LIALGSYNPFNNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKKEIADVAASGPG
LAFLAYPEAVTQLPVSPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEFPRALRGRREI
FIAVVCLVSYVIGLSNITQGGIYVFKLFDYYSASGMCLLFLVFFECISISWCYGVDKFYD
NIQEMIGYKPCVWWKLCWVVFTPLIVGGVFLFSAVQMVPLTMGDYVFPGWGQGVGWLMAL
SSMVLIPGYMIYMYLGLKGTYKERLRIMLQPPAVVRRPQENGPEQQVETNTANLSSPVNP
ANPASPTDPVPANPAPANASSPVAPANPAPPPANPPAAATSPVTCPTIVTTITTTATTTA
SPASPPTTTVSPTIPPPNPAHPAEPVNPPNPASATSNLTTAEANV
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaacggcaccaaaacggatggccaagtgacggaactgaacgaggtggccgcc
aataatgacaagcccaagtcgctggacatcaagcctgaaaaggcaaaaaaggagttgcca
gctagagaaacatggggagggaaatttgatttcctcctgtcgtgtgtgggttatgcaatt
ggactgggcaacgtgtggaggtttccttatctctgtggcaaaaacgggggaggggccttc
ttgattccctattttttgaccctcatatttgccgggatgccattgttccttctggaatgc
tccctgggtcaatacacctcaattggggggctcggtgtgtggaaactggctcctatgttt
aaaggtgtgggccttgcagctgctgtcctttccttctggcttaacatttactacattgta
atcatttcctgggctatttattacctgtacaactccttcaccgctgatctaccatggagc
tcgtgtaacaatctatggaacacagaaaagtgttacacaaattactccattgcagacacc
accaatctcaccagtgcagtggtggagttttgggagcgcaatgtgcacgaaatgaccgat
ggcttggaaaaaccgggccagcttcgagtgccactcgcaataaccctggccatcgcttgg
gttctcgtctacttctgtatctggaaaggggtcagctggacaggcaaggtggtttacttc
tcggcgacatatccctacttcatgctcttcattctcttcattcgtggagtgaccctgccc
ggagcaagagagggaattctcttctacatcacgcctgatttcgaaaagctcaaagaatcc
gaggtatggctggacgcagcaacccaaatctttttctcctacggattgggattggggtca
cttatcgctcttggaagctacaacccgttcaacaataatgtttacagagactctattatc
gtttgctgcatcaactcatgcaccagcatgtttgctggttttgtcattttctccattgtt
ggcttcatggcacacgtgaccaagaaggaaatcgccgatgtagcggcttcaggtcccggc
ttagctttcttggcatacccagaggctgtaacccagttgcctgtgtctccactgtgggct
attctgttcttctccatgctgctcatgctggggatagacagccagttctgcactgtggag
ggcttcattactgctttagtggatgaatttcccagagcgctcaggggtagacgagagatc
ttcatcgcagtcgtttgcctggtgtcttatgtgatcggcctttcaaacatcacacagggt
gggatttatgtgttcaagctgtttgactactactctgccagtggaatgtgtctgctcttc
ttggtcttctttgaatgcatctccatatcctggtgttacggcgtggacaagttctacgac
aacatccaggagatgatcggctacaagccttgcgtgtggtggaagctgtgctgggtggtg
ttcacccccctcattgtcggtggggtgttcttgttcagcgccgtacaaatggttccgctc
acgatgggagactatgtgttcccaggctggggtcagggagtgggctggcttatggcactg
tcttctatggttctcataccgggttacatgatttatatgtatcttggccttaagggcacc
tacaaagagcgacttcggataatgcttcagcctccagcagttgtcaggcggccgcaggaa
aacggacccgagcagcaggtggaaaccaatactgccaatttatccagccccgttaatccc
gccaaccccgccagcccgaccgatccagtccccgccaacccggctccagccaacgcaagc
agccccgtagcccctgctaacccggccccgccgccggctaaccctcccgccgctgccact
agccctgtgacttgtcccaccatcgtgaccaccatcaccacaaccgccaccactacggcc
agtccggccagccctcccacaacaacagtcagtccaacaatccctcccccgaacccagcg
catccagcggagcccgttaacccgccaaacccagccagcgcgacctctaacctgaccact
gccgaggccaacgtgtag
DBGET
integrated database retrieval system
