Syngnathus scovelli (Gulf pipefish): 125987837
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Entry
125987837 CDS
T08785
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sscv01009
]
125987837 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125987837 (hdac6)
04131 Membrane trafficking [BR:
sscv04131
]
125987837 (hdac6)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125987837 (hdac6)
Enzymes [BR:
sscv01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
125987837 (hdac6)
Protein phosphatases and associated proteins [BR:
sscv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125987837 (hdac6)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
125987837 (hdac6)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125987837 (hdac6)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
125987837 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
125987837
NCBI-ProteinID:
XP_049608323
LinkDB
All DBs
Position
2:complement(9643305..9654278)
Genome browser
AA seq
1086 aa
AA seq
DB search
MSSGADESSSLESSCGLKSVRRSPRLSPQGGAVQGNEKKKGSALQEAKKKGKMSRSREER
DKDLQVQLQRLDLSSRSSASRTGLVYSETFTRHHNLWDSNHAESPARVTSIIEELDRQEL
SSRCVQVQPRAATDEELLLVHTKEYIELIKSTQMMSEIELRQLSDKYDSVYIHPETFQVS
ILGVGSVLQLVDQVLTSELRNGFAVIRPPGHHAQSNKANGFCIFNNVAIAARYAQNKHKV
KRVLIVDWDVHHGQGIQYVFQEDPSVLYMSVHRFEQGAFWPHLPESANTFLGSAPAEGRN
INLAWATAGKSDADYVCAFQQLLLPVAYEFQPELVLVSAGFDAALGDPKGQMCVSPECFQ
TLTHMLMSLAEGQLVMALEGGYNLQATAKGATACVRALLGGACAPMASSTAPSDCAMKSI
SETISALYPYWTSLQVLEGDHLAEGNVLRLTGNEERPQGPLVTTTGLVYDERMMEHLNLW
DRHHPEQPQRIFKIFSRHEQLGLVERCQRIPARFATEDELAMCHTADHIKLMKSTTTMKS
RDLYKLGEEFNSIFINNQSFQSALLAAGSCFNAVDHIMSGQVRSGVAIVRPPGHHAERET
ACGFCFFNTAALAARYAQKTSQHASARVLILDWDVHHGNGTQHMFEDDDSVLYISLHRYD
DGSFFPSSEDAASDRVGVAKGTGFNVNVAWSNGRMGDADYLAAFHHVVMPIATEFNPSLV
LVSAGFDAARGDPLGGYRVTPECYAHLTHMLMSLACGRVLLILEGGYNLTSISDSMAMCT
SVLLGDPPPSLETPLPPAHRSAVAAINEVIRHHAPYWKSLRINIPESLRAAISSPSTHQR
RSGKVKGRRSRQSGPDKPPLPPVGLEVTAANHSLDQLTLGLASLDIRQSTPHPSDMGAES
SEKTSEKNQSMAESNEVSPKQSQSAESSQTPIVVVAAPADDDRGEEADPEQQGACGWSKP
QSTLELMSGVQMASMYVVNPLSWCPHLDAVKPLPPSGIDVFLPCQDCASEAENWICLTCY
KVACGRYVNEHMLMHGAMSDHPVVLSFCDLSVWCYACEAYVHNQAVFEAKNAAHSSKFGE
EILPRS
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctggagcagatgaatcttcatcattggaatcatcatgtggactaaagtcagtt
aggaggtctcctcgtctgtccccacagggaggtgcagttcaaggaaatgagaagaagaaa
gggagcgccctgcaggaggcaaagaagaaagggaaaatgtcaaggagccgagaagagcga
gacaaggatctgcaggtccaactgcagcggctggacctctccagcaggtcgtctgccagc
aggacaggtttggtctattcagagaccttcactcgtcatcacaacctgtgggactccaac
catgcagaaagtcctgccagagtgacgtccatcatagaggaactggacagacaagagctg
tcgtctcgctgtgttcaagtccagcccagggcagccactgatgaagagctgcttctcgtc
cacacgaaggaatacatcgagctgattaagtccacccagatgatgtctgagatagaattg
cgtcaactttctgacaaatatgattccgtttatatccatcctgagaccttccaggtgtcc
atattgggggtgggatcagtgctccagctggtagaccaggttctgacgtctgaattgagg
aacggctttgctgtcatccgacctccaggacatcacgctcagtcaaacaaggccaacggt
ttttgtattttcaacaacgtggccattgcagctcgctacgctcagaacaaacacaaagtc
aaaagggtgttgatcgtggactgggacgttcatcatggtcaaggtatccagtatgttttc
caggaagaccccagcgtgttgtacatgagcgtgcacaggtttgagcagggtgctttctgg
cctcacctgccagaatctgccaacacctttttgggcagcgcccccgccgaaggacgaaac
atcaatctggcctgggccacggcaggaaaaagcgacgcagactatgtgtgtgctttccag
caactgctgcttcctgttgcctatgaatttcagccggagctggttctggtctctgctggt
tttgatgctgcactcggggatcccaagggtcagatgtgcgtaagtcctgagtgtttccag
acattgacacacatgctgatgtctttggcagaaggtcaactcgttatggctcttgaggga
ggttacaacctgcaggcgacagcaaagggtgctaccgcctgtgttcgcgctttgctgggc
ggagcctgtgcaccaatggcttcatccactgcaccctctgactgtgccatgaagtccatc
tctgagaccatctcggctctgtatccatattggacctcacttcaagtcctggagggtgat
catcttgctgaaggaaatgtcctcagattaacaggcaatgaggagaggccacaaggtccc
cttgtcacgacaacaggcctggtgtatgacgaaagaatgatggagcacctgaacctgtgg
gacaggcatcatcctgaacagccacaaagaatcttcaagatcttctctagacatgagcag
cttggactggtggaacgttgccagcgcatcccagctcgtttcgccaccgaggatgagctc
gccatgtgtcacaccgctgaccacatcaagctgatgaagtctaccactacgatgaagagc
agagatctctataaactgggagaagagttcaactccatcttcatcaacaatcagagtttc
cagtcagccctgctggctgctggaagctgcttcaacgctgtggaccacatcatgagtgga
caggtcagaagcggcgtggctatcgtgcgtccccctggtcaccatgctgagagagagaca
gcatgcggtttttgcttcttcaacacagcggcactcgccgctcgctacgcacagaagact
tcccagcatgcatctgcacgagtcttaatcctggactgggacgttcaccacggcaatggc
acgcagcacatgtttgaagacgacgatagcgtcctctacatctcccttcatcgctatgac
gacgggagcttctttccgtcctcagaagacgccgcctcggaccgggtgggagtggccaaa
gggacgggctttaatgtcaacgtggcgtggagcaacggcaggatgggagacgccgattat
ctcgccgctttccaccatgttgtcatgccgattgccaccgagttcaatccaagtctggtt
ttggtgtctgcgggatttgacgcggcgcggggagaccctctgggtggataccgtgtgact
ccggagtgctatgcccacctgactcacatgctgatgtcgttggcttgtgggcgagtctta
ctcatactggaaggtggttacaacttgacgtccatctctgattcgatggccatgtgcacg
agcgtgttactcggcgaccctcctccttctttggagacccccctccctccagcgcaccgc
tccgccgtggcagccattaatgaagtcatccgacaccacgccccctactggaagtcgctg
aggataaacatcccagaatccctgcgagcagctatatcgtccccaagcactcatcagagg
cgcagtggaaaagtgaaaggcaggaggtcaagacagagtggtccagacaagccaccactg
ccccctgtgggattggaggtcacagcagccaaccacagtttggaccagctcacactagga
ttggcgagcttggacatcagacaaagcacaccgcacccatctgacatgggagcggagtca
agtgaaaagacatctgagaagaaccaatccatggcggagtcaaatgaagtttcacctaag
cagagtcaatcagcagagagctcgcagactccgatcgtggtcgtcgccgcaccagcagat
gatgaccgtggagaagaggcggaccctgagcagcagggagcatgcggttggtccaaacct
caaagtactctggagctgatgagtggagttcagatggcttccatgtacgtggtgaaccct
ctttcgtggtgtcctcacctggacgctgtcaagcccctgcccccatctggtatcgatgtc
ttcctgccctgtcaggactgcgcctcggaggcagagaactggatttgcctcacttgctac
aaggtggcgtgcggccgttacgtcaatgagcacatgttgatgcacggcgcgatgtccgat
catcccgtggtgctgagcttctgcgacctctccgtgtggtgctatgcgtgcgaggcctac
gtgcacaaccaggccgtgtttgaggcgaagaacgccgcccacagctccaagtttggagag
gagatcctgccaaggagttag
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integrated database retrieval system
