Syngnathus scovelli (Gulf pipefish): 125987898
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Entry
125987898 CDS
T08785
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
125987898 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125987898 (xpc)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
125987898 (xpc)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
125987898
NCBI-ProteinID:
XP_049608417
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Position
2:18648997..18655903
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AA seq
909 aa
AA seq
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MAKRSGCKKADVNTKKLKQVPKAKGGGTKVRAKRKDAGDDEDNAKEEEMLKKRVNPKPRS
SSDHGVGNTVGISTSKHVRAPVKREETHSTNDCDEKMSSAAPVTHSGKEKEEEESEEEED
DWEEVEELAEPLSPAESSEPALPSQPVEIEIETPEVRKKQKKKAEFEMYLRRMMNRYKKD
LLVDTHKVHLMCLLASGMFRNRLCSEPDLLAITLSMLPAHFSAVAKERKDQNYLSGLLKW
FQATFTLNPSLPYEERPDPRALLEKRLASLSVKNHQEMTHLFLLVLRSLQLFCRLVLSLQ
PLPLKPPPAKGKGATTSSNAPAKTNQNQVTSKTSSPEQKVSLGSKRPAEAKSAGDRGGKR
AKRKPLKGEEVEEAEKILSPGGPRPKNSKRRSIASKVTYKEESNSEGEEEVSDEDFQQSS
EEDSEDSEIGSKTAKVVEDKERGKSKNYRNNTAQKKTSSLGKDEENHKDREKGQAGSKAK
RQSTKKKNGVGADQWVEVFVDKTSSWVCVDVEHGVGAPQLCSQNATRPITYVVGVDGDGF
VKDLGRKYDPTWMTSSRKRRVEEEWWEETLQPFLRPEDEQDIKEEKEMQKKLLNKPLPVS
IAEYKNHPLYALKRHLLKYEAIYPDTAAILGYCRGEPVYSRDCVHTLHSKDTWLKEARTV
RIGEVPYKMVKGFSNRSRKARMMTEQKDDNDLALFGEWQTEVYQPPIAVNGKVPRNDYGN
VYLFKASMLPVGCVHLRLPNLHRVAKKLDMDAAPAVTGFDFHGGYSHAVTDGYIVCEENE
EILRAAWLEEQELQKQREKEKREKRVISNWTLLVKGLQIRERLKRRYGKKGQAADEDKCD
GLSSDEGGVEEEENSRAKTATETLAMSWPQNRQAKEEKAKEEKAGSFSGQRAKRERRGKE
KHLFPFEKA
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcggagtggctgtaagaaggcagatgtcaatacgaagaagctgaaacaagtg
ccgaaggcaaaaggtggaggaactaaagtgcgggcgaagagaaaagatgcaggtgatgat
gaggacaatgcaaaagaggaagagatgctcaagaagagggtaaatccaaagccacgttct
tcttcagaccatggagttgggaatactgttggcatcagcaccagcaaacatgtccgggca
ccggtgaagagggaggagacgcacagcacgaatgattgtgatgaaaagatgagctcagca
gccccagtgacacacagtggaaaggaaaaagaggaggaggagagtgaggaagaggaggat
gactgggaggaggtagaagaactggctgagcctctgagtcctgcagaatcctcagaacca
gccctgccctctcagccagtagagatagaaattgagacccctgaagtcagaaaaaaacag
aagaaaaaggcagagtttgaaatgtacctgagacggatgatgaaccgttacaagaaggac
ctgctggtcgacacacataaggtgcacctcatgtgtcttttggccagcgggatgttccgc
aaccgcctgtgcagtgaacccgatctgcttgccatcactctgtcgatgctgcccgcccac
tttagtgcggttgccaaggaacgtaaagatcagaactacctctctgggttgctaaaatgg
tttcaagcaactttcaccctcaaccccagtcttccctacgaggagcgtcccgatcctcgc
gctctgctcgagaaacgtcttgcgagcctgtcagtaaagaaccaccaggagatgactcat
cttttcctgctggtcttgaggtctcttcagctcttttgtcggttggttctttctctgcag
cctcttcctcttaaacctccaccagccaagggcaaaggcgccacaacttcctctaacgca
ccagcaaaaacaaaccaaaaccaggtaacatctaagaccagctcacctgaacagaaagtc
tctctaggctctaagaggccagctgaagcaaaaagtgctggagacaggggaggcaaacga
gcaaagagaaaaccattaaagggagaggaagtagaggaggctgagaagattttgtcgcca
ggtggcccaagaccaaagaactccaaacggcgtagcattgcctcaaaggtcacctacaag
gaagaaagcaacagcgagggcgaggaggaagttagtgatgaagactttcaacagtccagt
gaggaggacagcgaagattcagagattggaagcaaaactgccaaggtagtagaagataaa
gaaagaggcaaaagtaaaaattacaggaacaatacagcccagaagaaaacgagcagttta
ggaaaagatgaggagaatcacaaggatagagaaaaaggacaggctggcagcaaagcaaag
agacagagcacgaaaaagaaaaatggtgtcggagctgaccagtgggtggaggtgtttgta
gacaaaacctcctcctgggtgtgtgtggatgtggagcacggagtgggcgcacctcagctc
tgctcccagaatgccacgcggccaatcacgtacgtggtgggcgtggacggagacggcttt
gtgaaggacctgggccgcaagtacgaccccacctggatgacgtcaagcaggaagaggcgg
gtggaggaggagtggtgggaagagacgctgcagcccttcctgagaccagaagatgaacag
gacataaaagaggagaaggagatgcagaagaagctgctgaacaagcccttacctgtctcc
atcgcagagtacaagaaccacccgctgtatgcgttaaagagacacctgctcaagtatgaa
gccatctatcctgacacagccgccatactcggatactgccgaggagagccagtgtactcc
agagattgtgtgcatactctacactccaaagacacgtggctgaaagaagcacggactgtc
agaataggagaagtaccatataagatggtgaagggcttctctaatcgttcacgtaaggct
cggatgatgaccgagcagaaggatgacaatgaccttgctctgtttggggaatggcagacg
gaggtgtatcaacctcccatagctgtgaatggaaaggttccccgcaatgactatggcaac
gtctacttgttcaaggcttctatgctgccggtgggctgcgtccacctcaggctgcccaac
cttcaccgtgtggccaaaaagttggacatggatgctgctcccgccgttactggcttcgac
tttcatgggggatattcgcatgcggtcactgatggctacattgtgtgtgaggagaatgag
gagatcctcagagctgcctggttggaagaacaagagcttcaaaagcagagggagaaagag
aaaagagaaaaaagggtgatctccaattggactttgcttgtgaagggccttcagatcaga
gaacgtctaaagcggcgttatggcaaaaagggccaggctgctgacgaagacaaatgtgat
ggactgtcttcagatgaaggaggtgtcgaggaggaggaaaattccagagctaaaactgcc
acggagacactggctatgtcttggccacaaaacaggcaagcaaaggaagagaaagcaaag
gaagagaaagcagggagtttcagcggacagagggcaaagcgggagaggagaggcaaagag
aaacatttgttcccctttgagaaagcgtga
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