Syngnathus scovelli (Gulf pipefish): 125987909
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Entry
125987909 CDS
T08785
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125987909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125987909
03041 Spliceosome [BR:
sscv03041
]
125987909
03036 Chromosome and associated proteins [BR:
sscv03036
]
125987909
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125987909
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125987909
mRNA cycle factors
Common to processing body (P body) and stress granule
125987909
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125987909
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125987909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125987909
NCBI-ProteinID:
XP_049608434
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All DBs
Position
2:2644015..2655103
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AA seq
737 aa
AA seq
DB search
MSHVSVENVHGLEQQLAVLDLNVADGQGGGPNRRYIPPHLRNKDGPKNGGNVFAARAGYT
IAPAAAFGWDGGRGNFVNGYHDNRMTAGNAYNRGPPRMERGRGGMGGYRGNRGGGSFNPI
NPAQPMGFGLYENKDAGGWNTAKDAYSSFGNNRGKSAFFNDRSNANRTRFDHGGYSGGGG
GNSRWVEEACNDGDWSKPTPLNERLEHELFSASNTGINFEKYDDIPVEATGQNCPHHIES
FQDIDMGEIIMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPILSQ
IYAEGPGDALNAAKASGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSRVRP
CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGF
EPQIRRIVEQDTMPPKDIRQTMMFSATFPKEIQILARDFLDDYIFLAVGRVGSTSENITQ
KVVWVEESDKRSFLLDLLSATVIPSEVQDNTGENMEKPGKDSLTLVFVETKKGADALEDF
LYREGYACTSIHGDRSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFDLPS
DIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQH
KSSNRGRSKRFAGGFGARDYRQTAAGGNAGGFGGRGVRNQAGHGGARGFAGGGFGTFYTS
DGYGGNYSHSQVDWWGN
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtgtccgtcgagaatgtccatggtctagaacaacagcttgctgtcctagac
ttgaatgtggcagacggacaaggtggtggccccaacagaagatacattcctccacattta
cggaacaaagatggtcctaaaaatggaggaaatgtgttcgctgccagggcaggctacacc
atcgcacctgccgccgccttcggttgggatggcggccgcggcaactttgtcaacggctac
cacgacaaccgcatgaccgccgggaacgcttacaaccgcggcccgcctcgtatggagcgg
ggccgagggggcatgggcggctatcgcggcaacagaggcggcggctccttcaatcccatc
aaccccgctcagcctatgggcttcggcttgtacgaaaacaaagacgctggtggttggaac
accgccaaggacgcctacagcagcttcggaaacaacagaggaaagtcggctttcttcaac
gacagaagcaacgcaaatcgtacacggttcgaccatggtggctacagtggtggcggggga
ggaaacagccgctgggtggaggaagcctgcaatgatggagactggtccaaaccgacgccg
ctcaacgaacgactcgagcatgagttgttctccgccagcaacactgggattaattttgag
aaatacgacgacattcccgtcgaggccactggacagaactgccctcatcacatcgagagt
ttccaggacatcgacatgggggagattatcatgggcaacattgcgctgagccgctacacc
cgacccacccctgtccagaaatacgccattcccatcgtcaagtccaagcgagacctcatg
gcctgcgcacagacgggttctggaaagacggcggctttcctgctgccgattctaagtcaa
atctacgcagagggaccaggagatgctctgaatgcagctaaagcgtctgggcaggagaat
ggaaaatacggccgtcgtaagcagtaccccatttctctggtcctggccccgactcgagag
ctggcgctacagatatatgacgaagctaggaagttctcataccggtccagagtgcgccct
tgcgtcgtgtacggaggagcagacattggccagcagatccgagatctggagaggggttgt
cacctgctggtggccacgcctggaaggctggtggacatgatggagaggggcaagattgga
ctggactattgcaagtatcttgtcctggatgaggcggatcggatgctggacatgggcttc
gagcctcagatccggcgcatcgtcgaacaggacaccatgccgccgaaagacatccggcag
accatgatgttcagcgccacctttcccaaagaaatacagattctagccagggatttcctg
gatgactacatcttcctggcggtggggcgagtgggctccacctctgaaaacatcactcag
aaggtggtttgggtggaagagagcgacaagaggtcttttctcctggacctgctcagtgct
acagtcatccccagcgaagtgcaggacaatactggagagaacatggagaagcctgggaag
gactcgctgactctggtatttgtggagaccaaaaaaggcgccgacgccttggaggacttc
ctctaccgggaaggttacgcctgcaccagcatccacggcgaccgttcccagagggaccga
gaggaggctctgaaccagttccgatccggcaaatgccccatcctggtggctaccgctgtt
gcagctcgcggtctggacatctccaacgtgaagcacgtgattaacttcgacctgccaagt
gacattgaggagtatgtccaccgtattggacgcacaggacgagtaggaaacctgggactg
gccacgtcattcttcaacgacaagaacgggaacatcactaaagacctgctagacattttg
gtagaagccaaacaggaagttccttcatggctggagagcctggcttatgagcaccagcac
aagagcagcaaccgcggacgctctaagaggttcgccggtggtttcggagcacgcgactat
cgtcagacggccgccgggggcaacgccggaggtttcggagggcgtggcgttcggaaccaa
gcgggacacggaggagcccgtggctttgcaggaggtggtttcggaaccttctacacaagc
gacggttacggcggcaactactcgcactctcaagttgactggtggggcaactag
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