KEGG   Syngnathus scovelli (Gulf pipefish): 125988112
Entry
125988112         CDS       T08785                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sscv01009]
    125988112 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sscv03036]
    125988112 (kdm5c)
Enzymes [BR:sscv01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     125988112 (kdm5c)
Protein phosphatases and associated proteins [BR:sscv01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     125988112 (kdm5c)
Chromosome and associated proteins [BR:sscv03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    125988112 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID JmjN zf-C5HC2 PHD
Other DBs
NCBI-GeneID: 125988112
NCBI-ProteinID: XP_049608883
LinkDB
Position
2:complement(8320048..8337311)
AA seq 1577 aa
MEGDEFVAPPECPVFEPSWEEFKDPLGYIAKIRPIAEKSGICKIRPPPDWQPPFSVELDT
FRFTPRIQRLNELEAETRVKLNYLDRIARFWEIQASSLKIPHIERRILDLFGLSKVVSDE
GGFELVCKERRWARVAQRLGYPPGKNIGSLLRSHYERIVHPFEMFHSGASMPHCKPKHYD
GEDVDKEYKPHSIPLRQSVQPSKMSSYGRRANRCQPDGPEDPNPHPLTTGSQLISAPEPT
EEDIEKNPELKKLQIYGAGPKMMGLGLMARDRYRKKDELPQTVTVMDCPAPAAGVTCAKG
EPPVPQDGQTEECSATPQVPPATVTVKTEVKPEVKTEVKKEELEEHLRKESRQHLTDGPC
TKMTMRLRRNLNNMQSVDSFVCRMCGRGDDDEKLLLCDGCDDNYHTFCLLPPLADLPKSN
WRCPKCVAEECKKPSEAFGFEQATREYSLQSFGEMADAFKADYFNMPVHMVPTELVEREF
WRLVSSIEEDVTVEYGADIHSKEFGSGFPMNNGKRILTKEEEDYARSGWNLNVMPVLEQS
LLCHINGDISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSVAAERL
EEVMKKLTPELFEFQPDLLHQLVTIMNPNILMAHGVPVVRTNQCAGEFVITFPRAYHSGF
NQGYNFAEAVNFCTADWLPAGRSCIEHYRRLRRYCVFSHEELTCKMAACPEKLDLNLAAA
THREMFIIVQEERKLRKALMERGITEAEREAFELLPDDERQCDKCKTTCFLSALACSSCP
ESLVCLYHTQDLCNCPTDKLYLRYRYTLDELLAMLHRLKVRSESFDSWANRVKEALEQED
GNKIGIDYLETLKTEAAERKFPDNELLRKLNTVLKDIEHCQQKSTELLADSNTSATKMTL
AELKSLIETMQNLPCVMRQLEDVQAVLQLVSDYQSRAQELINERDWRRNNTPAELLQTLL
EQGTQLPVLVPECNLLQGLQELGRWLAEVRRTLGTEGAERPEVTLAVLRNLIEAGCNVPQ
SASVDTAMAELQELLTIAERWEEKAQICLEQRQKHPLSTLEAIVNEAQLIPVKLPNIQAL
QGCLSRARAWVTDLEEIQNGEHYPCLDDLEGLVAVGRDLPVFMEELRQLEFQVASAHSWR
DKASKTFLKKSSQHSLLEVLCPCAKRRHGKTEDTDDPDTNTLGLSAQDLRDPAAIVMAFK
EGEHREKEALLRLQKVNMAKIGRDAGGDKEAKGTSDDLMETDSANSVKENGNHPGSSVQT
VCVCAGQPRTPQLRCHLCKDWFHGGCVPFPSLLPSCGPPGNPRCWWDWDSRFLCPRCQRS
RRPRLETILALLVALQRLPVRLPEGEALQCLTERAITWQGRAKEALETPELQRALQTLQE
LKETLRCDKEEESEQKDADSNSVIVLSDSEGGEGEDGIIDLTDDSPKKKSNGIETTRENG
ISKKSGITGVGDLLPLLPELKGQVVQLSSTTRERLEGLQLDGDLLEVSLDQMDTISRVLQ
AASDPPVATLCTLIKMELEEQQRNSRGRIKDSKRKRKSHRGSGANTDGVGAALPDVPDSK
KTCPSPHLPADTHTEIL
NT seq 4734 nt   +upstreamnt  +downstreamnt
atggaaggggacgagtttgttgctcctccggagtgtccagtttttgagccgtcatgggag
gagttcaaggatcctctgggctacatcgccaaaatacgtccaattgcagagaagtctgga
atctgcaaaattcgaccgccaccagactggcaaccaccattttcagtggagctggatacg
ttccgattcacgccgcgcatccagaggcttaatgaactggaggcggagacaagagtgaag
cttaattatttggaccgcattgccaggttttgggagattcaggcttcctccttgaaaatc
ccgcacatcgagaggcgcattcttgatcttttcggtctctcaaaggttgtgtctgatgaa
ggcggttttgagttggtctgtaaagaacgtcgctgggcccgtgtggctcaaaggctgggc
taccctccgggcaagaacatcgggtctcttctgcgctcgcactatgagaggatcgtccac
ccttttgaaatgttccactctggtgccagcatgccgcattgcaagccaaagcactacgac
ggcgaggatgtggataaggagtacaagccccactccatccccctgcgtcaatcagtgcag
ccatccaaaatgagcagttacgggcgccgagcgaatcgctgccagcctgatggtccggag
gatcccaaccctcatcctctcaccactggctctcaactcatctcagcgcccgaacctacc
gaggaagacatagagaagaacccagagttgaagaagctgcagatctatggcgccgggccc
aagatgatgggacttggactcatggcacgggaccgatataggaagaaggatgaactgcct
caaactgtgaccgtcatggactgcccagcacctgctgctggggtgacctgtgcaaaaggg
gagcctccggttccacaggacggacagactgaagagtgctcagccaccccccaggtccct
cctgccaccgtcacggtcaaaacagaggtcaagccggaagtgaagaccgaagtaaagaaa
gaggaattggaggagcatcttcgcaaagaaagtcgccaacatcttaccgatggtccatgc
accaaaatgaccatgaggctacgacgtaacctcaacaacatgcaaagtgtggattcattt
gtgtgtcggatgtgtggtcgcggagatgacgacgagaaactcttgctctgtgatggttgt
gatgacaactaccacacgttctgtctgctgcccccgctcgctgatcttcccaaaagcaac
tggcgatgcccaaagtgtgttgcggaagagtgcaagaagccttcggaagcgtttggtttt
gaacaagcaactcgcgagtacagtctgcaaagttttggggagatggctgacgcattcaaa
gccgattacttcaacatgcctgtccatatggttcccaccgagcttgtggagagggagttc
tggaggttggttagcagcatcgaggaggatgtgactgtagagtatggagcagacatccac
tccaaagagtttggcagcggcttcccgatgaacaacggcaagaggattctgacaaaagag
gaggaggactacgcccgcagtggctggaacttgaacgtgatgcccgtgctggagcagtct
ctcctgtgccacattaatggcgatatctctggcatgaaggtgccctggctttatgttggc
atggtattctctgctttctgctggcacattgaagatcactggagctactccatcaactac
ctgcactggggcgaacctaaaacctggtatggagttccttcagtagctgctgagcgacta
gaggaggtgatgaagaaattgactccagagttattcgagttccagcctgacctcttgcac
cagttggtcactatcatgaacccaaacatcctcatggctcacggtgtaccggttgtcagg
accaaccagtgtgccggcgagtttgtcatcaccttccccagagcataccacagtggtttc
aaccagggatataattttgcagaagcagtcaacttctgtacagctgactggctacctgct
ggtcgttcctgcatcgagcactatcgacgtctgcggcggtattgcgtcttctctcacgaa
gagctcacttgtaaaatggcagcctgtccagagaaactggatctcaaccttgctgctgca
acacaccgggaaatgtttattattgttcaggaagagagaaagctgcgaaaggctctgatg
gaaaggggcatcactgaagcggaacgcgaggcctttgagctgttacctgatgatgagcga
caatgtgacaaatgcaagacaacatgtttcctctcagcactagcttgttcaagctgcccc
gagagtttggtgtgtctgtatcacactcaggatctgtgcaactgccccactgacaaacta
tacctcaggtacagatacaccctggatgagttgttggccatgttacaccgcctaaaagtt
cgctcagagtccttcgattcatgggccaacagagtaaaagaggcgcttgagcaagaggat
ggaaataagataggaattgattacttggagacactcaagacggaagcagctgaaagaaag
ttcccagacaatgaacttcttcgtaaactcaacactgttctcaaagacattgagcactgc
caacagaagagcactgaactccttgctgactcaaacaccagtgccacaaaaatgactttg
gcggagctgaaatccctgatcgagactatgcaaaacttgccctgtgtgatgcgtcagctg
gaggacgtgcaggcggttctgcagctggtgagtgattatcagagccgagctcaggagttg
atcaacgagcgcgactggaggcggaacaatacaccagcagagctgttgcagacgttgctg
gagcagggaactcagctgcccgtcctagtgcccgagtgtaatctgcttcaaggccttcaa
gagttaggacgatggctggcagaagtcaggcgcaccttgggcaccgagggggccgagagg
ccagaggtcacgttggcagtgttgaggaatttaattgaggcgggctgcaacgtgcctcag
agcgcgtctgtggatacggctatggcagaactgcaggagctactcacgattgcggagcgc
tgggaggagaaagcgcagatctgtcttgaacaaaggcaaaagcaccctctgtcaacactg
gaggcgattgtgaatgaggcccagcttattcctgtcaagttgcctaacattcaagcttta
cagggctgtctaagccgtgcgcgtgcttgggtaacagacctggaggaaatccagaatggg
gagcattacccatgcctggatgacctggagggcctggtggccgttggaagggacctgccc
gtcttcatggaggagctgcgacagctggagtttcaggtggccagcgctcattcctggagg
gacaaggcctccaagaccttcttgaagaagagcagtcagcacagcctgctcgaggtgttg
tgtccatgcgctaaaaggagacatggcaaaacggaggacacggacgaccctgatacaaac
actctgggcctttctgctcaagaccttagagaccctgcggctattgtgatggcattcaaa
gaaggggagcaccgggagaaagaggcactactgaggctacaaaaagtcaacatggcgaag
ataggacgtgacgcaggaggtgacaaggaagcgaaggggacgtcagatgacctcatggaa
acggactcggcaaactctgtcaaagagaatgggaaccaccctggctcctctgttcagact
gtgtgcgtgtgcgctggtcagccgcgtacacctcagttgcgctgccacctttgcaaggac
tggttccacggtggctgtgttcctttcccctcgctgttgccctcttgtggaccgccgggc
aacccacgctgctggtgggactgggactcacgttttctgtgtccgcggtgccagcgctcg
cgccgcccccgtctggagactatcttggcgttactggtagccttgcagcggttgcccgtg
cgcctgcccgagggcgaggcgctgcagtgtctcacagagcgagccataacatggcagggt
cgcgccaaggaggcactggagacccctgagctgcagcgggcccttcagacgctgcaagaa
ctcaaagaaaccctccgttgtgacaaagaggaggaaagtgagcagaaagatgcagactcc
aactcagtcattgttttgtccgactcggagggaggtgaaggagaggacggaatcatcgat
ctgacggacgattcccctaaaaagaaatccaatggcattgagaccactcgagagaacggc
attagcaagaaatctggcatcactggtgtgggcgatctgctgccgctgctccccgagctc
aaaggtcaggtggtgcagctttcatcgaccaccagagagcgactggaggggctgcagctg
gatggagatctgctggaggtctctctggatcagatggacaccataagcagagtcctgcaa
gcggcctctgatccgcctgtggcgacactatgcacacttattaagatggaacttgaagag
cagcagcgaaacagtcgaggtcgtattaaggactccaagagaaagcgaaagagccaccga
ggaagcggcgccaatacggacggcgtcggagcggctctgccggatgtgccggactcaaag
aaaacatgcccctcccctcacctgcccgccgacactcatacagagattctgtga

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