Syngnathus scovelli (Gulf pipefish): 125988130
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Entry
125988130 CDS
T08785
Symbol
cntn3a.2
Name
(RefSeq) contactin-3 isoform X1
KO
K06761
contactin 3/4/5/6
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125988130 (cntn3a.2)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sscv00537
]
125988130 (cntn3a.2)
Cell adhesion molecules [BR:
sscv04515
]
Immunoglobulin superfamily
Contactins
125988130 (cntn3a.2)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sscv00537
]
Others
125988130 (cntn3a.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
V-set_CD47
C2-set_3
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
125988130
NCBI-ProteinID:
XP_049608919
LinkDB
All DBs
Position
2:complement(20080623..20136467)
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AA seq
1026 aa
AA seq
DB search
MTLPWKQILLLSIIECLADCLDSGLYHGPRWRMEPGDLFIPMDSIEEEAILTCDAKSTPP
PQYRWSLNGTFINLSLDRRRRLSGGNLIISSLDRYGDVGVYQCMAYNTAGAILSRRAHLK
FAYLDHFKVHTRSAVSVREGQGVVLLCGTPTSSGDLTYAWVFNEYPYFVQQDNRRFVSQQ
TGNLYIAKVEPSDVGNYTCVVMNSITKGKVHSSPTSLILRTDGVMGEYEPKIEVNFPDNV
PAAKGSTVTLECFALGNPVPEITWKRANGVPFPSKVKMKYANAVLEIPSFQQEDTGGYEC
VVENKMGKNTATGLLTFFAKPQWIQTMKDTALAIEENLNWECRANGKPKPIHTWLKNGQQ
LLSRDRILVKDGVLSVSVLTLSDAGMYQCVAENEHSIIYFAAELMVLASPPDFTGTVLRA
LLKAKAGSMVTLECKPQAYPLASILWKKGNIPILTNNRITLSPDGTLRLANVSKADAGSY
TCFARNRFGMSSTTGRLLVTDPTRFTQSPGDMEIIVGESIVLPCQVTSDPVLDVSFSWAF
NGQLIGNDDGHFELVGGRAAGDLMIRNIQLNHTGKYICVVDTDVESLSAVAILVVKGPPS
PPDSVMVEEVTDSTAQLVWTPGRDNGSPLINYIIQTRTLFTVGWQRVNTVPEIIDGSTLT
ATVVDLNAWVEYEFRVLARNNVGVGEPSPVSVKTRTEDAVPDAAPGDVGGGGGSRSELVI
TWEPVPEELQNGESFGYIIAFRAFGEVSWTHVATSAPGASRYVYRNESIAPFSPFHVKVG
TYNSKGQGPFSPVVTIYSAEIEPSGVPVGVWARSVSAYEIEVNWQALSLTPEKVLGYEVV
YWEDDTKPETMGKVRVPWNYTSVTVSGLAGHTQYFLTVSAFNTAGTGPFLPAINVTTKKT
PPSQPPVDIEWTLIGSQLSLYWEPVVALESESEVTGYQLSYRRSQLKEVNTLTTTNSTAE
LTLPEVDDEYIIHIQSLSEGGLGPASDAIRVHQLSMSARGSRASNADASLPFLLLASAIS
TFRSTL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgccatggaaacagattctactgttatcgatcatcgagtgtttggcagattgt
ctagacagtgggttgtaccatggtccaagatggaggatggagccaggtgatctgtttatt
ccaatggactcgattgaggaagaggctattctaacttgtgacgccaagagtaccccacca
cctcagtacagatggtcgctgaatgggactttcataaatctgagcctggatcgacggcgg
cgtctgtcagggggcaacctcattataagcagcctggaccgctacggggatgtaggcgtc
taccagtgtatggcctacaacactgcaggagcaatcctcagcaggagagcacatctcaag
tttgcctacttggatcatttcaaagtccacaccagaagcgccgtatccgttcgagaggga
caaggagtggtgttgctttgtggaacgcccacttcctcaggagatcttacatatgcatgg
gtctttaacgagtacccatactttgtccagcaagacaatcgccgcttcgtctctcagcag
acaggaaacctttacattgccaaggttgagccatctgacgtgggcaactacacgtgtgtg
gtgatgaacagcatcaccaagggcaaagttcatagctcgcctacatcgctcatcctcagg
acagatggagtgatgggtgaatatgagccaaaaatagaagttaatttcccagacaatgta
cccgccgcaaaaggatcaacagttacgctggagtgtttcgctctcgggaatcctgtccca
gagatcacttggaagagggccaatggcgttccattccccagtaaagtcaaaatgaagtac
gccaacgcagtgctggagatacccagcttccaacaggaagatacaggaggatatgagtgt
gtggttgagaacaagatgggcaagaatacagccacaggtctcctgactttctttgccaag
cctcagtggattcagaccatgaaggacacagccctggccatagaagagaatttgaactgg
gagtgtcgcgccaacggcaaacctaaacctattcacacatggctgaagaacggccagcag
ctgctctccagggacaggatccttgtgaaggacggcgttctctccgtgtctgtgctaaca
ctttccgatgccggaatgtaccagtgcgtggccgagaatgagcacagcattatatatttt
gctgctgaactaatggttttagcttctcctccagacttcacagggactgtcctcagagct
ttgcttaaggccaaggcaggaagcatggtgacattggagtgcaaaccccaagcatatccc
ttggcgagcattttatggaagaaaggaaacattcctattctcaccaacaacaggatcact
ctttcaccagatggaacgctgaggcttgccaatgtgagcaaagctgatgcgggcagctat
acgtgcttcgccaggaatagatttggcatgtcgagtacaactggaaggctccttgtcaca
gatccaaccagatttacccagagccctggagacatggaaatcatcgtaggcgagagcatc
gtgttaccctgtcaagtaaccagcgatccagtcctcgacgtttccttttcttgggccttt
aacggacagctcatcggcaatgatgacggtcacttcgagctggtgggcgggagagctgca
ggagatctgatgatcaggaatattcagctcaaccacacgggcaaatacatctgcgtggtg
gacacggatgtggaaagcctctcagccgttgccatattggttgtgaaaggcccgcccagc
ccaccggactctgtgatggtggaggaggtgacagacagcacagcccagctggtgtggacc
cccggacgggacaacgggagccccctcatcaattacatcattcagaccaggacacttttt
actgtgggatggcaaagggttaacacggttccagagatcattgatgggagcacactgaca
gccactgtggtggatcttaatgcctgggtggagtatgagtttcgggtgctggctaggaac
aatgttggagttggagaacccagcccagtgtcagtcaagacaaggacagaagatgcagtc
cctgatgccgcgccaggtgatgtgggcggaggaggcggaagcaggtcagagttggtcatc
acatgggagcctgtccccgaagaactacagaatggtgaaagctttggttacatcattgct
ttccgcgcttttggagaagtcagctggacccatgtggccacctctgccccgggtgcatct
cgctatgtgtaccgcaacgaaagcatcgcgcccttctccccattccacgtcaaagttggc
acatataacagtaaagggcaggggcccttcagccccgtggtcaccatctactctgcagag
atagagccaagtggggtgccagtgggagtttgggccagaagtgtctcagcctatgagatc
gaagtgaattggcaggctctctccttaacccccgaaaaggttctcggctatgaggtggtg
tactgggaagacgacacaaaaccagagactatgggaaaggttcgcgttccctggaactac
acctcggttacagttagcggcttggcagggcacacacagtatttcctgactgtcagtgcc
ttcaacacagcgggcaccggccccttccttcctgcaatcaatgtcaccacaaaaaaaacc
ccaccatcccagccgcctgtggatatcgaatggaccctaatcggctcccaactttctctc
tactgggagcctgtggtggcactggagtccgagtcagaagttacaggttaccagttgtca
tacaggagaagtcaactcaaagaagtaaatacgctcacaacaaccaattcaacagctgag
ctgacgctccccgaggtcgacgacgagtacatcattcacattcagtccctgagtgaagga
ggcctgggccctgcttctgatgccattcgagtccaccagcttagtatgagtgctcgcggc
tcgagagcctcgaatgcggacgcatcgctgcccttcctgctcctcgccagtgcaatatca
acattcaggtcgacactgtga
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