Syngnathus scovelli (Gulf pipefish): 125988155
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Entry
125988155 CDS
T08785
Symbol
lamb2
Name
(RefSeq) laminin subunit beta-2 isoform X1
KO
K06243
laminin, beta 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125988155 (lamb2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125988155 (lamb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
DUF4443
Laminin_II
EzrA
Motif
Other DBs
NCBI-GeneID:
125988155
NCBI-ProteinID:
XP_049608961
LinkDB
All DBs
Position
2:18885004..18915863
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AA seq
1806 aa
AA seq
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MRLSVCGCEMQASLLVLVCVLTAATGQEPDHNHGCAHGSCYPATGDLLVGREKSLKASST
CGMRRKEPYCIVSHLQEQKKCFDCDSRRPYDPVYNIINHRIENVITTFKPHRKKSWWQSE
NGKSNVYLQLDLEAEFHFTHLIMTFKTFRPAALLIERSADFGRTWKIYRYFSHDCAANFP
GVTQGPLHTINDVICESRYSDIEPSTEGEVIYRVLDPAIRIEDPYSPNIQNQLKITNLRV
NFTKLHTLGDNLLDPRPEIKEKYYYAIYELVVRGNCFCYGHASECAPIDGVRDDIEGMVH
GRCVCNHNTKGLNCERCEDFYNDMPWRPAEGRNTHSCKKCNCNSHSSVCHFDMAVYLATG
NVSGGVCDDCQHNTMGRNCELCKPFYYKEPLRDIRDPRVCIACDCDPEGSENGGMCDSHT
APTLGMVAGQCRCKANVEGQRCDKCRTGYFGLSADNPQGCQPCRCDHRGTVAGSTQCDPV
SGDCFCKRLVTGRSCDQCLPEHWGLSLDLNGCRGCECDIGAALDNDCSIDSGQCRCRSHM
TGRQCTQVESAYFFMALDHLLYEAELAKMGQGCTLETREHELGRPATWTGLGFARVPEGG
TLEFIISNIPYSMEYDLLIRYETQMPRDWEEVRITVIRPGPIPTSSPCGNTIPDDDKHVV
ALPAGARFMVPPQPVCLEKGVTYTIRFEFRRYQDANVVLNGAANAVLLMDSIALMPRHSS
MELFNAGDLASSNRKQTYERYRCHEGAKSVIHPSMSDTCAKLITSMSAVINDGALPCNCD
PQGSISSVCDVRGGQCRCRPNVIGRRCEQCAPGTYGFGPSGCVACGCSVEGSVTRLCDKY
TGLCQCRPGAFGQQCDRCQAGHWGFPNCRPCQCNSHADECDQRSGACINCRDNTGGDKCD
RCANGYYGNPIVGIAAGSWCRPCPCPDSPTSGRHFAASCYQDNRNQRIVCNCNQGYTGIV
KRSRLTICKRTRCEECAPGYYGNPSQPGGSCQPCQCNNNIDISDIDACDRRVGECRKCLY
NTEGPNCGICKSGYFGDASRRNCRKCVCNFLGTERSQCMEREDCVCERATGQCQCLPNVI
GQTCDHCSPGHWNLASGKGCEPCGCDPHNSVTSSCNEFSGQCHCRDGFGGKTCTDCQENY
WGDPRTQCRACDCDWRGIETSQCNRITGHCVCQQGVSGVRCDQCARGFSGIFPNCQPCHQ
CFGDWDRIVQDLAVRTRTLAERAHEIQTTGLTGPYEKAFRDLEEKLAQARIIVNSRNATA
AAITTLMELIEQLRSQISETTDTLNRLEGDLTLVQDSSSEASKELSALEREARELNFTSE
QLHHQLDIIKNSNFLGAYDSIRTSYNKSWDAERRANQSTVNRPSTVSQSADTRRRTERLI
SAKKDDFNRKNAANKRSLSELKTKVQNLDMQKINEKVCGTTDDAPCAESPCGGAGCRDDE
GNRHCGGLSCNGAVAAADNALERAKHAEKQLNKAMGEVEGLVIKVAEAKTKAEEAKGKAQ
AALDKAKVTKDQVERSNKDLRDLINQIRDFLMHEGADPDHIEVVANRVLELSIPASPLQI
KHLADEIKERVRSLSNVDAILAQTQDDVRKAEKLLLGAKRARHHAEGVKTTVETVKQALV
DAKTAQTSAEKAIAKARADIDETETRLAQIESETSNSERQLSEAVHRLGTLGREISVLKT
KRANNSMAAARAEETATMARDKANEAKQILDGQLTDKYHEVKQRVGTKAKAVQDAKAKAE
SLRDEAKKLLQDAENKLKRLAELEKNYEENERRLKGKADQLDGLEDKMKAILNDINKQIQ
IYNTCQ
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgcggttgtccgtgtgcggctgcgagatgcaagcgtcactgttggtgctggtgtgcgtc
ttaactgcagccactggccaggagcccgaccacaaccatggctgtgcccatggcagctgt
tacccggcaacaggggacctactggtcggacgagagaagagcctgaaagcctcgtccacg
tgcggcatgaggagaaaggagccctactgcatcgtcagtcacctgcaggagcagaaaaaa
tgttttgactgtgactcccggaggccttacgaccctgtctacaacattatcaatcaccgc
atagagaacgtaatcaccacgtttaagcctcatcgcaagaaatcatggtggcagtcagaa
aacggaaagtcaaatgtgtatctccaactggacttggaggcagagtttcatttcactcac
ctcattatgactttcaagacattccgtccagcagccctgctgattgagagatcggctgat
tttggtcgcacgtggaagatctaccgttacttttcccatgactgtgccgccaacttccct
ggtgtaacccagggtcctctgcacaccatcaacgatgtcatctgcgaatcgcgttattcc
gacatagaaccgtccacagagggagaggtcatctacagagtgttggatccagccatcagg
attgaagatccatacagcccaaacatccagaatcagctgaaaatcaccaacttgagggta
aacttcactaaacttcacacgctgggcgacaacctgctggatcccagacctgaaatcaaa
gaaaagtattactacgccatctatgagctggttgtgcgtggaaactgcttttgctacggc
cacgcctctgagtgtgccccaatcgatggcgtcagggatgatatagaaggaatggttcac
ggcaggtgtgtgtgtaaccacaacaccaaaggtttgaactgtgagcgctgtgaggacttc
tacaacgacatgccgtggagacccgcagagggccgcaacacccactcatgcaaaaagtgc
aattgcaatagccactcatcagtgtgccattttgacatggccgtgtatttggccacgggc
aacgtcagcggtggtgtgtgcgatgactgccagcacaacacgatgggccgaaactgtgaa
ttgtgcaagcctttctactacaaagaacccctcagagacatccgggatcctcgggtctgc
atagcttgtgactgcgatccagaaggttcagagaacggagggatgtgcgacagtcacaca
gcgccgacgttaggcatggtggctggtcagtgtcgctgcaaggccaatgtggagggccaa
cgctgtgacaagtgtaggaccggctactttggcctaagtgccgataaccctcagggctgc
cagccttgccgatgtgaccacaggggaacagtggcaggcagcacccaatgcgacccagtc
agtggcgactgcttctgcaagcgtcttgtcactggacgaagctgtgaccaatgtctgcca
gaacactggggcctgagtctcgacctgaatggctgccgaggctgcgaatgtgacatcgga
gctgctctggataacgactgctccatcgacagtggtcagtgtcgctgccgcagtcacatg
acaggacgccagtgtacacaggtggagtctgcttatttcttcatggctctggatcacctc
ttgtatgaagccgagttggccaaaatgggtcagggctgcacactggagacccgagaacac
gagctgggtcgtccggccacatggacgggtcttgggtttgcccgcgtacctgagggtggc
acgcttgagttcatcatcagcaacatcccttactcgatggagtacgacctgctcatccgc
tatgagacacagatgccccgggactgggaagaggtacggataacagtaatccgtccgggc
ccgattccaacgagcagcccttgtggaaacacaatcccagatgatgacaaacatgtcgtc
gccctgccggctggagccaggttcatggtccctccacagcccgtgtgtctggagaaaggt
gtgacatacaccatccgctttgagttccgacgctatcaggacgccaacgtcgtcctcaac
ggagcggccaatgctgtcctcctcatggactctattgctttgatgcctcgtcactcttcc
atggagcttttcaatgccggggacctggcctctagcaacaggaagcagacctacgagcgg
taccgctgccacgagggggcgaagagtgtgatccatccatcaatgagtgatacctgtgcc
aagctgatcacaagcatgtcggctgttattaacgacggggctttgccttgtaactgcgac
ccccagggatccatcagctcggtgtgcgatgtccgcggaggtcagtgtcgctgcaggccc
aatgtgattggtcgacggtgcgaacagtgtgctcctggaacttacggctttggaccctcg
ggctgtgttgcctgtggttgcagcgtggaaggttccgtcactcggctgtgtgacaaatac
accgggctgtgccagtgccggcccggagcatttggccagcagtgcgacagatgccaggca
ggtcactggggcttccccaattgtcgcccctgccagtgcaacagccatgccgatgagtgt
gaccagaggagcggtgcgtgtattaactgcagagacaacactggaggagacaagtgtgac
aggtgtgccaatggttactacggcaacccaattgtgggcatagcagctggcagctggtgt
cgcccatgtccctgtccggacagtcccaccagtggacgccattttgcagcatcctgttac
caagacaaccgtaaccagcgaattgtctgcaactgtaaccagggatacacagggattgtt
aaacgctccaggctaaccatttgcaagcgtactcgatgtgaggaatgcgctccaggttac
tatggcaacccctctcagccggggggaagttgccagccgtgccagtgcaacaacaacatc
gacatatctgacattgatgcgtgtgaccggcgagtcggcgagtgcaggaaatgtctttac
aacactgaagggcccaactgcggcatctgcaaaagtggctattttggagacgcatcaaga
cgaaattgcaggaagtgtgtatgtaacttccttggcacggagcgcagccagtgtatggag
cgtgaagactgcgtgtgtgagcgggcaacgggccaatgccaatgtctacctaatgtaatc
ggtcagacgtgtgaccactgctcccccggacactggaacctcgctagtggcaaaggctgt
gaaccctgcggttgtgacccccacaactcagtcacctcatcatgtaacgagtttagtgga
caatgtcactgccgcgatgggtttggtgggaagacctgcacggactgtcaggagaactac
tggggagaccctcggactcagtgcagagcttgtgactgcgactggcgaggcattgagacg
tctcagtgcaaccgaatcacaggtcactgtgtatgccagcaaggggtgtcgggtgtccgc
tgtgatcagtgtgcccgaggtttctctggcatcttccccaactgccagccctgccatcaa
tgctttggggactgggaccgtattgtccaggacttggcggtgcgcaccaggactttggca
gagcgtgcccatgagattcagaccactgggcttactgggccatatgagaaggcttttaga
gaccttgaagagaaactggcccaagctcgaattatcgtcaactcacgcaatgccactgct
gctgccattaccactttgatggaacttattgaacagcttagatctcagatcagtgaaacc
actgacacactgaaccgtctggagggagatttaactcttgtccaggacagcagctcggag
gcaagcaaggagctgagtgctctggagagggaggccagagaactgaacttcacttcagag
cagctccatcaccagctcgatatcattaaaaactcaaatttcctaggcgcctacgacagc
atccgtacctcctacaacaagtcttgggatgctgagcgccgcgctaaccaatcaacagtg
aacaggcccagcacagtcagccagtcggccgacacccgccgtcgcaccgaacgcctcatc
tctgctaagaaggacgatttcaaccgcaaaaatgctgccaacaaacgctcgctttcagaa
ctcaagaccaaagtccagaatctggacatgcagaagatcaatgagaaggtttgtggtaca
acagacgatgctccctgtgcggaaagcccttgtggaggtgcaggttgccgtgacgacgag
gggaaccgtcactgtggaggcctaagttgcaacggtgctgtagcagccgctgacaatgct
ttggaaagagccaagcatgctgagaagcaactcaacaaagccatgggagaagttgaggga
ctcgttatcaaggtggcggaagctaagactaaggcagaggaggccaagggtaaagcccaa
gcggctctcgacaaagccaaagtcaccaaggaccaagtggagcgctccaacaaggacctg
cgagacctcatcaaccaaatcagggacttcctcatgcacgaaggggcagaccctgaccat
attgaggtggtggccaatcgcgtgctagagctctccatccccgcttcccctctccagatc
aaacatcttgcggacgaaattaaagaacgtgtacgcagcctgtccaacgtagatgctatt
ctggcgcagacccaggacgatgtcagaaaggcagaaaaactactgctgggtgccaagagg
gcaaggcatcacgctgaaggtgtgaagaccacagtggagacagtgaagcaggccttggtg
gatgcaaagactgctcagacatctgcagagaaggccatcgccaaagccagagccgacatt
gacgaaacagagactcgcctggcacagatagaatcagagacgtctaacagtgagcggcaa
ctaagcgaagccgtgcaccgtctgggcacgctgggccgggagatcagtgtgctgaagacc
aaacgcgctaacaacagcatggcagcagcccgggctgaagagacggccaccatggcacga
gacaaagcaaacgaagccaaacagattctagatggacagcttaccgataagtaccatgag
gtgaagcagcgtgttggtactaaggccaaagctgttcaagatgcaaaggcaaaggcagag
agccttagggatgaggccaaaaaactactgcaagacgccgagaacaagttgaagagacta
gcagagctagagaaaaactacgaggagaatgagagaaggttgaaaggcaaagctgatcaa
ttggatggcttagaagacaaaatgaaagccatcctcaatgacatcaacaaacagatccaa
atttataacacgtgccagtag
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