Syngnathus scovelli (Gulf pipefish): 125988243
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Entry
125988243 CDS
T08785
Symbol
focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125988243 (focad)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125988243 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
125988243
NCBI-ProteinID:
XP_049609117
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All DBs
Position
1:28949891..28966576
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AA seq
1826 aa
AA seq
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MTWHLKGLSDSHIAFGVCIAKPGTMEALKVRLDFQSPIIQAQAVRRLVAAVLKEKGPNGQ
ISLSCTQGSALETLWERCCGERAAVRSACCHAVVLLVEQGHADLRHVLNGVLNLLPSARN
AQGLLKVVAELLRIQTERRDPDVSFGCPYGIRSDPHPFITALENRPDCWTAILAEIHDFV
QQAVDRNEPAYVAMLVPFLRYLYCQPERRTEHGFLRQGLLRTLLPAGGLGTRDESSPPSD
SLLRCFCRLVPHMPVDDVEALLELQWLISALLPALSEKREDAWTSQRVRLLLQLLCACQS
CLSFGGDCRPLVGLMTEIIPTCGQKLPLDEMLMAVALLLFEAPAAQQSSLLSLALTLAPE
HTTEPCHWLSPVLVLPVLQLLSCSDVTEPLAERHTHDLNQKLAQSVLRSVTRQTAQFQQS
PLPEKLLLTPWFSELRTAVATLRRVIENPSAAVDWLLSLTSALSSSQQHLPSSLALTVAH
LLLLTGQDQVCRLALDAVRAVAAADPRQVPSLLPVLLFKLGKEKDPSLTHALLECLPNLG
THKLCVPTVLQTLGLLASNLKLKAAAMRLTTTLWKKQDRVYPELQRLLAQPDNRVVMGRE
TQWEQVLARAACLRDICRERPYQHGSDMLAAIALTLKQCSGADQVTPAVLALQGLQELCR
AEVVDIVSTWRTLGPDLRCDSRPLMVKAVSQLLALVPQLAVKSEEYEKLKDEAVSFLWHY
AVNKDPDVASCGFRALADFPEATHTVNHLPEAARPVAPPPEQKDEDEEQAGKDDEGDLSV
TGSSYVKLLTLTPSPALPALEHFLTSLVKQEMSQMPRGVYFSALRGGSLRSDQGKTLAGI
PAFMLKSYEKNKQPGLKAGLAAGLLLCHELPQQTDREGRPIVRFLLSRSRSYQQTMSALI
HEVNIQPSEWHRALLLPQAWRSFMNGTFHAVLEGRRADLEMQRRKSDQEEREELRYKQHC
AWLWTRDHLTDSIRAATKDSPVVQGNSVLALSALAAVLAKYERNLPADSDSGLTAGPEFV
PTSSWLAMLLDTLLSIISGSYKASGQVFPWYLHRSYSGENTASGIARSCASLALSLLVPV
LVWWHQDSLRQVLSTLRAGLPESPAEDDSQAVGFHSGLALGMVLSGLHQQRLGDVTPPQD
AELLLDALSALEACAFDTRAEYNTGSMLGLALVLSALCNGGQTQQRGRVTQTLDKLLSAL
QDSGGQGRMMQEVLAYSLACVSVSAFSVSLVDAAKADQTVATLRTLTEESQQTPGFSTAL
GLAVHGLSLCGHGKAEDLQPRLLAAWVKILLAEGCPTMQRLAAVNGLVALVGSESYLIQL
KSQLEPSSNQQSRLNEVIRAISQIVSFSGAIGLQSNCACLLGHLHLSHMFTSHSHTAVPQ
DFSYLTEKSVIRAVVDLLTEAGKKGPDFAHPSVVQTALTPLASVGTGVQYPPVNWSAILS
PLMRLSFGEEVQHQCVALAAAQAQFSQSASLFLGSWLSSPLVYSLGFQTRALLCEKLSWW
MKHVPEDKLQFFVEALGLQSFREDPEAQRLSLRGSLLRGLAEAMAAPNPPAACWTVLSSA
TEKIFSLLPAQIKDGDVDFYVGVAECLSEMSDTEIDRIAGVTEMEKSCFVLAYLASRGRI
PLLALNDVIAGVLRGRPSHRIGWILLQTFYQCRLAAGINTGVAKRMEWLLELMGLIRNIA
YGSATVTCANIKLATNFLFQVFAAAVVSWGDHSVPLLLGIRARWFPWSPASKPAALTHGL
YGAESLTEDALPRCLLALPRSLPPLLHKEPWKCHSHKFIEWLLGMVEGPEQSLSATTIDA
ARAALLALRCSPEFKKKSVWTRAYGW
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atgacgtggcacctgaaaggcctctcagactcccatatcgcgtttggcgtgtgcatagca
aagcctggcacgatggaggccttgaaggtgcgccttgacttccagagccccatcattcaa
gcccaggcggtgagaaggctcgtcgctgccgtgctgaaagagaaaggcccgaatggacaa
atcagcctgtcttgcacccagggctcggcgctggagacgctatgggagcgttgctgcggc
gagcgcgccgccgtgcgctcggcctgctgccacgccgtcgtgcttctggtggagcaaggc
cacgccgacctacgccacgtcctcaacggcgtcctcaacctgctgccttccgcacggaac
gctcagggcttgctgaaagtcgtggccgagctgctacggatccagacggagcggcgagac
ccggacgtgagcttcggatgtccttacgggatcaggagtgatcctcacccattcattaca
gctttggagaaccgcccggactgctggaccgccattctcgccgagatccatgactttgtc
cagcaggctgttgacagaaacgagcccgcctacgtggccatgctggtcccctttctacgc
tacctctactgccaacccgagaggcgcaccgagcacggcttccttcgccagggtcttctg
cggacactgctccccgcaggtgggctcggcacgcgggacgagagttcgccgccgtccgac
agccttctccggtgcttctgccggctggtgccgcacatgccggtggacgatgtggaggcg
ctgctggagctgcagtggctgatcagcgctttgcttcccgccttgtcggagaagcgtgaa
gacgcctggacgagccagagagtgcgtctcctgctccagttgctctgcgcctgtcagagc
tgcctcagcttcggcggagactgtcgaccgctcgtgggcttgatgacggagatcatcccg
acgtgcggacagaagctgcctttggatgagatgctcatggctgttgctttgctcctgttt
gaggcccccgcagcgcaacagagcagcctgctcagtcttgcactaactttagctcccgag
cacaccaccgagccctgccactggttgagtccggtcctggttctccccgtgctgcagctc
ctgtcctgctcagatgtcaccgagccgctcgccgagcgccacacgcacgacctcaaccag
aagctggctcagagcgtgttacgcagcgtcaccaggcaaaccgctcaattccaacagtct
cctctaccggagaagcttcttctcaccccctggttcagcgagctgagaacggccgtggcc
acgctccgccgagtgatcgagaacccttcggcggccgtcgattggctcctttcgctcacc
tcggctctgtcgtcaagccagcagcacctgccgagctccctcgctctcacggtcgcccac
cttctcctcctcacgggccaggaccaggtctgccgcttggctttggatgccgtacgggcc
gtcgcagccgccgacccccgccaggtgccatcccttcttcccgtgctgctgttcaagctg
ggcaaagaaaaggatccgagcttgacgcacgctctgctcgagtgcctgcccaacctcggc
acccacaagctctgtgtccccacggtgctgcagactctcggcctgctcgccagcaacctc
aaactcaaagcagccgccatgcggctcacgacgaccctttggaagaagcaggaccgcgtc
taccccgagcttcagcgtctgctggctcagccggacaacagggtggtgatggggagggaa
acccagtgggagcaagtgttggcccgagccgcctgtcttcgagacatctgccgagaaagg
ccttaccagcacggaagtgacatgttggccgccatcgcgttgactctcaagcagtgcagc
ggagccgaccaggtgacccctgccgtgctggccctgcaaggactgcaggagctgtgccgt
gctgaggtcgtggacatcgtgtctacatggagaactctcggaccggacctgagatgcgac
tctcgtccactgatggtcaaggcggtttctcagcttctggctctggttccccaactcgcc
gtcaaatctgaagaatatgagaaactaaaggatgaagcggtcagctttctctggcattat
gctgtcaacaaggatccagatgtagccagctgtggttttcgggccttggccgacttccca
gaagcgactcacaccgtcaatcatctccccgaggcagccaggcccgtagcgccgccaccc
gagcagaaagacgaggatgaggagcaagcggggaaggacgacgagggagacctctcagtc
acgggctcatcatatgtcaagttgctgactctcaccccctcgcctgctttaccagccttg
gagcatttcctgacatcgctggtcaagcaagagatgagccagatgccgaggggcgtgtat
ttttccgccctgcggggaggcagtttgcgttcggaccagggtaaaaccctggcggggatc
ccggcctttatgctcaagtcctacgagaagaacaagcagccggggctcaaggcaggactg
gcggccggcctgctgctttgccacgagcttccgcagcagacggatcgcgagggccgaccc
atcgtgcgcttcctcctcagccgcagccgaagctaccagcaaaccatgagcgccctcatt
cacgaagtgaacattcagccgtccgaatggcaccgcgcgctgctcctccctcaagcgtgg
cgcagtttcatgaacggcacgttccacgcggtccttgagggtcgacgcgccgatctggaa
atgcagcggcgcaaaagcgaccaagaggagcgagaagaactgcgctacaagcaacactgc
gcctggctgtggaccagagaccacctgacggattcaatccgagccgcgaccaaggacagt
cccgttgttcagggaaattccgtactggctctgagcgcgctggctgccgtgctggctaaa
tacgagcgcaacctgcccgccgatagcgactcaggcctcacggctggacccgagtttgtg
cccaccagcagctggttggccatgctgctcgacaccctgctcagcatcatcagcggtagc
tacaaggccagcgggcaagtctttccgtggtacctgcatcgctcttattcgggcgagaac
actgcgagtggcatcgctcgctcctgcgccagcttagcgctgtccctgctggtgccggtg
ctggtttggtggcatcaagacagtctgaggcaggtgttgtcgacgctgcgggccggcctg
cccgagtcgcccgccgaagacgactcccaggccgttggcttccactccggcctggccctc
ggcatggtgctgtccggcttgcatcagcagcgcctcggtgacgtcactcctcctcaggac
gccgagctcctcctcgacgctctctcggcgctggaagcttgcgctttcgacacccgggca
gaatacaacacgggctccatgttgggtctggcgctggtgctttctgcgctttgcaacggt
gggcagacgcagcaacgtggccgggtcactcaaacactggacaagctgctgagcgccctg
caggacagcggcggacaggggcgcatgatgcaagaggttttggcctactcgctggcgtgc
gtcagcgtttcggccttcagcgtcagcctcgtcgacgccgccaaggcagaccagaccgtg
gccactctgcgcaccttgaccgaggagagtcagcagactcccggcttctccacggctctg
ggcctggcggtccacggcctgtccctgtgcggccacggcaaagccgaggacctccaacct
cgactcctggctgcctgggttaagattttactggcagagggttgtcccaccatgcagcgg
ctggctgccgttaacggactggtggctttggtgggatccgagagttacctcattcagctc
aagagccaactggagccttcgtccaatcagcagagccgactcaacgaggtcatccgggcc
atttcgcagattgtgtccttctcaggagcgatcggcttgcagtccaactgtgcctgcctg
ctgggccacttgcatttgtcgcacatgttcaccagtcacagtcacacggcagtgcctcag
gattttagttacctgacggagaaaagtgtcatcagggccgtggtggacttgctcacagag
gcgggaaagaaaggtcctgactttgcccacccgagtgtggtccaaaccgccctgacgcct
ctggcctcagtcggaacgggggtccaatacccgcccgtcaactggagcgccatcttgtcc
cctctgatgagactcagctttggtgaggaggttcagcatcaatgtgtggccttggctgca
gctcaagctcagttttcccagagtgcttcgctcttcctgggctcctggctcagctcgcct
cttgtgtacagtctcggtttccagacgagggcccttctgtgcgagaagctctcctggtgg
atgaagcacgtcccagaggacaagctccagttcttcgtggaggctctgggcctgcagagc
ttccgggaagacccggaagcgcagcgtctctccctgcgtggctctctgctgcggggtctc
gcggaggccatggccgcgcccaacccgcccgccgcctgctggactgttctctcctctgcc
accgagaagatcttcagcctgctgcccgcccagataaaggacggcgacgtggatttttat
gtgggcgtcgccgaatgtttgtccgagatgtccgatacggagattgaccgcatcgcgggt
gtcacagagatggaaaaaagctgcttcgtcttggcttacctggcatcccgcgggaggatt
ccgctgctggctctgaacgacgtcatcgccggcgtgctccgcggtcggcccagccaccgg
ataggctggattctcctgcagacgttctatcagtgtcgcctggccgccggcatcaataca
ggcgttgccaagcgcatggagtggctgctggagttgatgggactcatccggaacatcgcc
tacggttccgccactgtcacatgcgccaacatcaaactggccaccaacttcctgttccaa
gtctttgccgccgccgtcgtttcctggggcgaccactcggtgcccctcctgctggggatc
agggcgcgctggttcccgtggagcccggcctccaagcccgccgccctgacgcacggcctt
tacggcgccgagtcgctgacggaggacgccctgccgcgttgcctgctggcgctgccccgc
agcttacccccgcttctccacaaggaaccctggaagtgccactcgcataagttcatagag
tggcttctcggcatggtggagggacctgaacaaagtctgtctgcgacgacaattgacgcg
gctcgagcggctctgttggccttgcgctgctcccctgagttcaagaagaagtccgtgtgg
accagagcgtacggatggtaa
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