Syngnathus scovelli (Gulf pipefish): 125988249
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Entry
125988249 CDS
T08785
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125988249
00535 Proteoglycans [BR:
sscv00535
]
125988249
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125988249
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125988249
Proteoglycans [BR:
sscv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125988249
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125988249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF959
DUF1554
Motif
Other DBs
NCBI-GeneID:
125988249
NCBI-ProteinID:
XP_049609134
LinkDB
All DBs
Position
2:3952784..3973127
Genome browser
AA seq
1553 aa
AA seq
DB search
MLKVLLLALCVGGLEAWFWNADPVPTTPTSTDAPATTSGVKKVNEEGEDLSGLGEEIITV
ATGIRNLVKTWDHVTTSPGTTNGSLKVESAEWNVTGNVDGSGGGKGEEGSGDASGSGSGS
RQDLVDTVVLSSNLSDANNGTLDPRCLPVPSGWPMCSQKRPQFFTLPNFFNHTSMEQVGD
TLQEWAQLTRAGCHRHAEWFLCFPLVPECPSPTRVPLRLPCRSFCKQVQDSCWASLDSAE
VPLECDLLPVKECVSVSYSEEQSSLSLLQLIGDPPPDEIGRVRWPGGTQAYVFTSGSVAG
QPAMAYVPNPFYRHFSLLFHIKPSTSGPSVLFSITDGPQKLMYVAVKLSAVRAGRQTVQF
FYTEPGSEESYEAASFDVPSLVDKWSRFSLSVFEEQVTFYQDCDAVPRVVKFERSPDPMD
LDRRAGIFVAQAGGADQDKFEGEIADLRLVGNSRAAERLCDDIDDDSDAASGDFGSGEGS
RRQTEGGVKTTPASIRPVPEPPLIKGSRFKETGLTASKGEKGDRGEKGTRGDRGHAGPKG
DPGSGFSSNAGSGGQKGEKGDKGSTTFGSKGERGAQGLPGPPGPPGAGATRLGDGSQSLP
GPPGREGLPGQKGAKGELGFPGEDGRPGPEGPPGFPGTPGIPGAKGDKGERGEGQPGPRG
PPGPPGPGARNHPTFDDMEGSGYPDWEKIRGPPGPPGPPGPPGTSVALGSNGPVAFGPPG
PPGRNGLPGSPGLTGPPGQPGLRGEKGDCGDLNSLGGAGEKGSRGDPGLPGMPGQTGLAG
LPGPMGPPGPPGRPGPPGSPSPFSFNEREDFERNGGSPGPKGTPGIPGLAGKPGIPGSNG
DKGAEGPRGPPGIPGLDGFPGQPGPKGDQGEKGEQGLPGRDGGQPGPPGPPGPPGPIIYR
GGAHDNLHWSDTLQTGVGIPGQAGFPGPIGPKGEKGDRGLPGFATKGEKGEPGVILGSDG
RPLYQAGLTGKPGDIGPPGPVGPPGPYGPSGQKGEIGLPGRPGRPGLNGIQGEKGEPGGG
FGTTYQGPPGPPGPPGPPGPVSRAYDDYSRYYPDSKGEKGDPGTPGLPGIPGAGTNFDIY
AFKNELKGETGLKGEKGEPGGGHYDPRYGGSGIGAPGVPGPPGPRGDSIRGPPGPEGPPG
PPGRGYDGRPGPPGPPGPPGVASFPGPHRGTHTISIPGPPGPPGVPGTPGHASGVTVLQS
YDIMTATARRQPEGSLVYIIDRTDLYLRVRDGVRQIQLGGYIPLPSVDVNEVAAVEPPPV
VPYPPHSSSNDSHRQSERPEQVNPDRISQPDPRHSGQPYYPYQTNPDGRDQTLPDGRYRP
DTRHTAQPEPRYPVPTDPRYPSYTDRVNNQDGRYYAVTPQRRPAPPVVQNPVHRHTSGPG
LHLIALNQPQTGSMKGIRGADFLCFSQAQSIGMKGTFRAFLSSRLQDLQSIVRRADRDHM
PIVNLKDEVLFDNWDSIFNGATIKENVPIYSFDGKDVLRDSTWPEKMMWHGSVSNGQREV
DAFCESWRMNSHVLTGKASSLQSGSLLQQTSSSCSNSYVVLCVENSYIGHSRR
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaggtcctgctcctggctctgtgtgttggaggcttggaggcctggttctggaac
gctgacccggtgcccaccacgccgacctcgacggacgcccctgcaacgaccagtggcgtg
aagaaggtgaacgaggagggtgaggatttgtcagggcttggagaagaaatcatcaccgta
gctacgggaatccgtaacttggtcaagacgtgggatcatgtgaccaccagccccgggact
actaacggttccctgaaggtggagagcgctgagtggaacgtgacgggtaatgttgacggc
tcgggaggagggaagggggaagaaggctccggtgatgcatccggatcaggatcggggtcc
aggcaagatctcgtagacaccgtggtcctttccagtaacttaagcgacgcgaacaacggg
actctggatccacgctgtttgcccgtcccgtccggttggcccatgtgctcccaaaagcgc
ccgcagttcttcaccttgcccaattttttcaaccatacatccatggagcaggtgggggac
accctgcaggagtgggcccagctgacccgggcgggctgtcaccggcacgcagagtggttc
ctctgcttcccgctggtgcccgagtgcccgtcgcccacccgggtacctctgcgcctgccc
tgccgcagcttttgcaagcaagtgcaggacagctgctgggcgtcgctggacagcgccgag
gtgccgttggagtgcgacctcctgcccgtcaaggagtgtgtgtctgttagttactcggaa
gagcaaagcagtttgtctctgctccagctaatcggagatccgccacctgatgagatcggt
cgggtccggtggccaggcggcacccaggcctatgtcttcacctcggggtccgtggcgggc
cagccggctatggcctatgtgcccaacccattctaccgccacttctccctcctctttcac
atcaagccttccacttcgggcccctccgtcctcttctccatcaccgacgggccgcagaag
ctcatgtatgtggccgtcaagctcagcgccgtgcgggcgggtcgccagacggtgcagttt
ttctacaccgagcctggttcggaggagtcgtacgaggcggccagcttcgacgtgccgagc
ctggtggacaaatggagccggttctcgctgtccgtctttgaagagcaggtgaccttctac
caggactgtgatgcggtgccacgagtggtgaagtttgagcgttccccggatcccatggac
ctggacagaagagcaggcatctttgtcgctcaggccgggggggccgaccaggacaagttt
gagggcgaaattgccgatctgaggctggtgggaaactctcgggcagccgaacgcttgtgt
gatgacatcgacgacgactctgatgctgcctctggcgactttggtagcggtgaaggcagc
aggaggcagacagaaggcggagtgaagaccactccagcatccatcagaccggtgcccgag
cccccgctgattaaaggaagcagatttaaagaaacaggcttaactgcgtctaaaggagag
aaaggtgacagaggagagaaaggcacccgaggggacagaggccacgcagggcccaaggga
gacccgggctcaggtttctcctcaaatgctggaagtggcggacagaagggagaaaaggga
gataagggtagcacaacttttggaagtaaaggagagcgtggcgctcagggccttccaggt
ccgccgggtccccctggggctggtgccacccgccttggagatgggtcacagagtctgccc
ggacctccgggccgagaaggattgcctggtcagaagggagctaaaggagagcttgggttc
ccaggagaggatggacgacctggtcctgaagggccgccaggtttcccaggaacacctgga
attcctggtgcaaaaggagacaagggtgagcggggtgaaggacaacctggacccagaggt
ccacctggacctcctggaccaggagctagaaatcatccgacatttgatgacatggagggc
tcgggatacccagattgggagaagatccggggtcctccaggtcccccgggccccccgggc
ccacctggtacatcagttgcacttggatctaatggtccagttgcctttggacctcctggc
ccacctggaaggaatggtttaccgggttctcctggactcactggtccaccgggtcaacct
gggctccgaggagagaagggcgactgcggtgacctcaactctcttggaggagctggagag
aagggttcccgtggtgacccgggacttccagggatgccaggacagactgggttagcaggg
cttccgggtcccatgggcccacctggacctccgggacgaccagggccacccggatcgcca
agcccctttagctttaatgagcgagaggactttgagagaaatggtggctcacctggacca
aagggtactccaggtattccaggtctggcgggtaaaccaggtatacccggaagcaatggt
gacaaaggagcagagggaccaagaggtccaccaggaattccaggtctggatggttttccc
ggacaaccgggtccaaaaggagatcaaggggagaagggggaacaaggtctgccaggtcgt
gacggagggcaacctggacctccggggcctcccggacctcctgggccgatcatttatcgg
ggtggtgctcatgacaaccttcattggagtgacactttacagacgggagtaggaattcca
ggccaagctggatttcctgggcccattggaccgaaaggggaaaaaggcgataggggtctt
ccagggtttgccacgaagggtgaaaaaggagagcctggtgtcatcctgggttcggatggg
agacctctgtaccaggcgggcctgacaggaaaaccgggagatatcggacccccgggccca
gttggacctccaggcccttatggcccttcaggtcaaaaaggagaaattggacttccaggt
agaccaggtcgaccgggactgaacggcattcaaggagaaaaaggcgagccgggcggcggg
ttcggtaccacataccaaggtcccccaggtccccctggcccacctggacctcctggacca
gtatccagagcttatgatgactattccaggtattatccagatagcaaaggagagaaaggt
gaccccgggacccccggattacccggcataccaggtgccgggacaaactttgacatttat
gcctttaagaatgaattgaagggtgaaacgggtttgaaaggagagaaaggagaaccaggc
ggcggccattacgacccacgatatggaggaagcggaataggagcaccgggagtccccgga
cctccaggccccagaggggactctattcgcggcccaccgggtcctgaagggccacccggt
ccaccaggcagaggctacgacggccgccctggaccaccagggccacctggaccccctggc
gtcgcctccttccccggacctcatcgaggcacgcatactatcagcattcctggaccacct
gggccacctggagtacccggaacacctggacatgcttctggggtaacagtgttgcagtcc
tatgacatcatgacagccaccgctagaagacaacctgagggttctctggtctacatcata
gaccgtacagatctttatctacgagtcagagatggggttcgtcaaatccagcttgggggc
tatattccattaccaagtgtagatgttaatgaggttgcagccgtggagccgccaccggtc
gttccgtatcccccacacagcagctccaacgactcccacaggcaatcggagaggccagag
caagttaacccggaccgtatatctcagcccgacccacgtcactcaggccagccgtactat
ccgtaccaaacaaaccccgacggcagagaccagacccttcccgatggcagataccgccct
gacacaaggcatacagctcagccagagccgcgataccctgtcccaacggaccccagatac
cccagttacacagaccgggtcaataaccaagatggccgatactacgctgtgacccctcag
cgaaggcctgccccacccgtggtccagaatcccgtccaccgtcacacatctggtccaggg
ctccatctcatcgccttgaaccagccccagacgggatctatgaagggcatccgaggcgcc
gacttcctgtgcttcagccaggctcaaagcatcggaatgaagggaaccttccgggccttc
ttgtcctccagactccaagatctccagagcattgtccgcagagctgacagagatcacatg
ccaatagtcaacttgaaggatgaggttttgtttgacaactgggattcgatcttcaacggc
gccaccatcaaggagaatgtcccgatttactcttttgatggaaaagatgttctccgcgac
agcacatggcctgagaagatgatgtggcacggctcggtcagcaacggtcagcgggaggtg
gacgctttctgcgagtcgtggcgcatgaatagtcacgtactcaccggcaaggcgtcctcg
ctgcagagcggcagtctgctccagcagacttctagcagctgctccaactcctacgtggtg
ctgtgcgtggagaacagctacatcggccatagcaggagataa
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