Syngnathus scovelli (Gulf pipefish): 125988378
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Entry
125988378 CDS
T08785
Symbol
prdm16
Name
(RefSeq) histone-lysine N-methyltransferase PRDM16 isoform X1
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv00310
Lysine degradation
sscv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
125988378 (prdm16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125988378 (prdm16)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125988378 (prdm16)
Enzymes [BR:
sscv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
125988378 (prdm16)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
125988378 (prdm16)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
125988378 (prdm16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
PRDM2_PR
zf-C2H2_6
zf-C2H2_11
zf-C2H2_jaz
zf-H2C2_5
zf-BED
SET
C2CH-4th_BIRD-IDD
zf-C2H2_8
Motif
Other DBs
NCBI-GeneID:
125988378
NCBI-ProteinID:
XP_049609454
LinkDB
All DBs
Position
2:21165934..21330440
Genome browser
AA seq
1399 aa
AA seq
DB search
MRSKARARKLAKNDSEPVDSMYDTEADLPGLAAGGTCTDSPEDDAEDGIINMSPLPSPSP
SHPNNHHLLLHPHMYNTHHHLLSNNSSSNDQNFTTPKEGSPYEAPVYIPDDIPIPADLEL
RESSVPGAGLGVWAKTRIRVGERFGLHSKGSSFGWEMMNDHDDSSPDSCVKKVVDDMGNI
KFALDTGPDSPSNSWLKYVRSAPSFEEQNLVACHLTGDQIYYKAVRDIDAGEELLVYMKD
GIFPEGSMAPNLQDEQVYRCEDCDELFSSTLELRRHQKYSCSSAGSIFDTLREDFKQERE
DSDEPVHECKDCEKIFPNEYSLGQHMIVHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSG
KRFECENCDKVQQTRHVFTDPSNLQRHIRSQHVGARAHTCPECGKTFATSSGLKQHKHIH
SSVKPFICPDGLHLLVPPGEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQLFSTTSS
LNKHRRFCEGKNHYGSPTGMFNPGIPMSSSPIMAKAKSHHPHLSGLNQSSLGFPDYFPSR
PHPHAGLPFSAGPHGFPSLPHGFPGIFPPSLYPRPPLLPASPMMKTPLGNSTQEVKLPQS
PLDGPPLSLVSSTNGNGGNGLSLTEDKDSESKLDLSSGGEVKTKSKMADISDGSDLEDVN
TTSGTDLDTTTGTVSGDGSDLESDGDSEREHNGKRRKPPVVLSRQDGHQLEEANSAVIPA
VSNSGNLSINRPFFSSVSTQHSFFPPPDEQALPPTTANANVATTDSIKAIASIAEKYFGP
GLIGLHQEKKMGPLPYHSMFPFQFLPNFHNSLYPFSSERGALTSGLFFKGDPKSPREQLH
KMVSGALGAPVPAVESPFDLSTKPKETKLSPPTPVNPSNPNTNTGSSRGSSVISGSEEQP
LDLSINNRSRGSHNGMAVEAQNQKNHIYGIGKGVSIKDESPSFPIPHSQSLHQSPIVPHQ
QAQQHQPPPLHYAKPSAFFMDPIYSRVEKRKLLDPVGALKEKFLRPSTQLFHPQMSAMEN
MTEKLESFGALKLDMPPNSLQHTAHPLFNFRSPPPSLSDAILRKGKERYACRYCGKIFPR
SANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTN
LDRHLKKHEHENIPVSQQSGMLSNLGTTISSPNSEPDNHALLDEKEDSYFSEIRNFISNS
EMNQASSSTDKRSDPSEEEHPSGHRSNSKMALQGLEEEEEEAEGDDEEEEEGSLTEKSHD
EAPESPSPVATRAYEEEEDEEETTPLSMSYEHSRRCLEEEGSLLDLEGHSSFPKGLDVLR
KAASDEQHFDVKDIFNTSLESETLKETLYRQAKTQAYAMMLSLSDNNPLHTPSQNSLDAW
LGMGGGSSETSSFHPLNHI
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgagatccaaggcgagggcgagaaaactggccaaaaatgacagcgagccagtggacagc
atgtacgacacagaggccgaccttccgggcttggcggccggcggcacttgcactgacagt
cctgaagacgacgcagaggatggcatcatcaacatgtctcccctgccctcaccgagcccc
tcccacccaaacaaccaccacctgctgctgcacccccacatgtacaacactcaccatcac
ctcctcagcaacaacagcagcagcaatgaccagaacttcaccacacccaaggaaggctcg
ccctacgaggcaccagtctacattcccgacgacattccgattcccgccgatctggagctg
cgggagtcatcggtaccgggtgccggcttgggcgtttgggccaagacccgtatcagagtc
ggcgagaggttcggtctgcacagcaaaggcagctccttcggatgggagatgatgaatgac
cacgacgattcctcccctgacagctgcgtcaaaaaggtggtggacgacatgggcaacatc
aagtttgcgctggacacaggcccggacagccctagcaacagctggctcaagtatgtccgc
tccgccccttcatttgaggagcagaatctcgtcgcctgccacctcactggagaccagatt
tattacaaagctgtccgagacatagatgcaggggaggagcttttagtttatatgaaggac
ggcattttcccggagggatccatggcacccaacttgcaagatgagcaggtgtatcgctgt
gaagactgtgacgaattgttctcatcaactctcgagttgcggcgacaccaaaaatattcc
tgctctagtgcaggctccatctttgacaccctcagagaagacttcaaacaggagcgggag
gacagcgatgagcccgtccatgagtgtaaagactgtgagaagatctttccaaacgagtac
agtctgggtcagcacatgatagtccacacagaagaacgggagtacaagtgtgaccagtgt
cccaaagctttcaactggaagtccaacctcattcgtcaccagatgtcacatgacagcggc
aagcgctttgagtgtgaaaattgtgataaggtacagcaaacccggcacgtcttcacagat
cccagcaatctccagcgtcacatccgctctcaacacgtgggggctcgagctcacacttgt
cccgagtgtggcaagacatttgccacttcgtcaggcctcaaacagcataagcacatccac
agcagtgtcaaaccttttatctgccctgatgggctgcatcttcttgtacccccaggtgag
gtgtgccacaaatcctacacccagttctccaacctctgccgccacaagcgtatgcatgcc
gactgccgaactcagatcaagtgcaaggactgtggccagttgttcagcactacctcctcc
ctaaacaagcaccggcgcttctgcgagggcaaaaaccattacggctctccaacaggaatg
ttcaatcccggtattcccatgagctccagtccaattatggctaaggccaagtcccaccat
cctcacctttcgggtctcaaccagtccagtttgggcttccccgactactttccgtccaga
cctcatcctcatgctggtttgccattctccgcagggccccacggtttcccatccctcccg
catggtttcccaggcatctttcctccatcactgtatccacgaccgcctctattgccagct
agtccaatgatgaagacgccccttggcaacagtactcaagaagtcaaactgcctcagagt
cctctagatggccctccattatctttagttagctcgacaaatggtaatggtggcaacggt
ttaagtctgactgaggacaaagatagcgagagtaaactagatttgtcctctggtggagag
gtaaagactaaatctaagatggcagacatttcagatggcagtgacctggaagatgttaac
accacaagtgggacagatttggacaccacaactggtacggtctcaggtgatggttctgac
ctggagagtgatggagatagtgaacgtgagcataatggcaaaagaagaaagccgcctgtg
gtcctatcaaggcaagatggccaccagttagaggaggcaaacagtgctgtgattccagcg
gtgtctaattcagggaacctctccatcaaccgtccctttttttcatcagtgtcaacccag
cactctttcttccccccacctgatgagcaagcgctgccacccaccaccgcgaatgctaac
gtagccaccaccgattccatcaaagccattgcttctatagctgagaaatatttcgggccc
ggcttgataggtcttcatcaagagaagaagatgggtccattgccctaccactccatgttc
cccttccagttcctacccaatttccacaactccctgtacccctttagcagtgagcgaggt
gccctcacctctggcctgttctttaagggagatcccaagtcgcctcgtgagcagctacat
aagatggtttctggtgcactcggcgcgcctgtccccgctgtagaatcaccatttgatctc
agtacgaagcccaaggagaccaagttatctcctccaactccagttaacccctcaaaccca
aacacaaatactggcagtagcagaggctcttcagtaatatctggcagcgaggaacaacca
ttagacctcagtattaacaacagaagccgaggaagtcacaacggtatggcagtcgaagcg
caaaatcaaaagaaccacatctatggaattggaaagggagtgtccatcaaggatgaaagt
cccagttttccaattcctcactcccagtcactgcatcaatccccaattgtaccgcaccaa
caggcacagcaacaccaaccacctcctctgcactacgccaaaccttccgctttcttcatg
gacccaatatacagcagggtggagaaaaggaagctacttgaccctgtaggagctctgaag
gagaagttcctcaggccttcaacgcagctctttcatccgcagatgtctgccatggagaac
atgacagaaaaactggaaagctttggtgcactaaaactggacatgccgcccaattcactg
caacatacggctcacccactcttcaacttccgctcccctcctccttctctctcggatgcc
atcctccgcaagggcaaggaacgctatgcctgcaggtactgtgggaaaatcttccctcgc
tcggcaaacctcaccagacacttgcgaacacacacgggcgaacagccttacaggtgcaag
tactgtgaccgctcattcagcatctcgtcgaacctgcaacgccacgttcgcaacatccac
aacaaggagaaacccttcaagtgtcacctgtgcaaccgctgcttcggtcagcagaccaac
ctcgaccgccatctcaagaagcacgagcatgagaacattcctgtgagccaacagtctggg
atgctttccaacctaggaaccaccatctcctcgccaaactccgagccagacaatcatgca
cttttagatgagaaggaggactcgtacttctccgaaatccgaaacttcatctccaacagt
gagatgaaccaggcctccagctccacggacaaaagatctgacccgtctgaggaggagcac
ccgagtggccacaggtccaactccaagatggccctccaggggctggaggaggaggaagag
gaagcagagggggatgatgaggaggaagaggaaggcagcctgactgaaaagtctcacgat
gaggctccggaatccccgtctccagttgcaacacgtgcatatgaagaggaagaagacgag
gaagagactactccattatctatgagctacgagcactctcgcaggtgtttagaggaggag
ggctctctgctggaccttgaaggtcattccagctttcccaagggcctggatgtattacgt
aaagcagccagtgatgagcaacattttgacgttaaagacatatttaacacatcgctagag
tcggagactttgaaagaaacgttgtacaggcaggctaaaacgcaggcttatgcaatgatg
ctgtctttgtccgacaacaaccctttgcacacgccctcccagaactccctggatgcttgg
ctgggcatgggaggcggatcgtctgagacgagcagctttcacccgctcaaccacatctag
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integrated database retrieval system
