Syngnathus scovelli (Gulf pipefish): 125988383
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Entry
125988383 CDS
T08785
Symbol
rab11fip5b
Name
(RefSeq) rab11 family-interacting protein 1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125988383 (rab11fip5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125988383 (rab11fip5b)
Membrane trafficking [BR:
sscv04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
125988383 (rab11fip5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
TraC-like
Motif
Other DBs
NCBI-GeneID:
125988383
NCBI-ProteinID:
XP_049609480
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All DBs
Position
1:9197735..9210816
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AA seq
1338 aa
AA seq
DB search
MMSFIDLDDEQRWVPTHVNVTVLRGRGLRTKSKHGSRYLYAVVQVGKDKYTTGLVEKAEV
PVWSEECCFELLPGILEEEDEEGGGGGAYPPGSADLVITVMHRVLIGLDVFLGQTIIPLG
RMFREGACPRDQWFKLHSKAGRKAKERGELQLTVLFTRNNMTASMFDLTVKDGRRSAFGK
LKDRVTGRKRPDVESSSAIVPGRYAALSVTPGQPSGDESGCAPRGRDAEITEEKRSVMKD
FFKGKLRKSSDTRSCSSLASESSASSMASDTTSPPPALGLLSDLPSSPIYSTVTRADPRY
EDRDLTKTVLTSRHASNILTHKRAFSDEAGKITASVPPMNPTMESVQCQQSMSQSKSSVC
INGSHVYDSEPSIPKSAGALSSKLVLLEKCSPLSRSLQNLTKRNEDKGTLAEEQRWSFDK
MKKEEKDGEKEARWAEMGEHPEQVANPSAADSSDKGRKLRKTLFSGGRSDSVPAKPDGSQ
IASNSEGRLRGWFSSTDSQSKPRLEVSPKLEITTSISPPIPPRASSSTDSLPIDQNHTHP
ITPPSTPISPSNPFFEELQSSSPAAPSSSTLFHISQHSDRGTTSPTRGTSKKPSIKRERP
RPVARQVSLPEFLPQSSKRSSDRDRPMSVSIQDWEDSFDAFASNRLNSPNGDATQMQLES
TLASSQRYSPHVANINTQYHIQERQRYQENPPPLPPRRNLTNEIYSDGWLHRGQELAVHK
EAYLLSQTGMASLQFGRESECKRPGSSVSPDSETSASFNLNSQLHGIIPSPGSTSEESLK
KYEPLEDITDFWGGMLFEQDLYGRVCKGNVRQPTLHVGPENVLDQENIADLLKKSYNPVS
VSEFKTGRTPPLVESTESSTISHTIGINNNVSFSLTLPDLNMNVSNSDFSFIDSDGSSQS
DAIDDHKGLSILRRIGPQPSKDSKIGVYHEMATHRNTKTLKDSLRDSSLEQTSLADKMCK
VSPVCQDVLLEPNKDSIDETQEPLVASQSDLGIEPIDNKKGKDDTLQEIKNDYDDDENLH
NEKELFPRVVSTRVRPKGISSTHSLSSIDLGQHSSIVSEGPSSYQPSKPAPSPNQALDKL
PMPSTDDSLLLIGDSKTENHSEMSFEVLHAKVAPHLRGFSECEQGCTLTSLTDTSANLPL
SPACCPLTCPSNTGLQSTGSRSLIVAPYTASSPSTLNLSTTEQPPFDACHSLLIEETRPA
CKLPRQESRLQPVKPLTQLEKKESRSVLEKLKSTISPGRSAHQVVVEPPKIQEPTEDRSA
LYEHLTNMELISLLLQQDMDMNKQQAASERQRAQLEKCEADLKKVKAQVRDLEDYIDNLL
LRIMEQTPTLLQVRSRHK
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccttcatcgatctggacgacgagcagcggtgggtgcccacgcacgtcaatgtc
accgtgctccgcggcaggggactgcggaccaagagcaaacatggcagtcgctacctgtac
gcggtggtccaggtgggcaaggacaagtacaccacgggcctggtggaaaaagccgaggtg
cccgtgtggtccgaggagtgctgcttcgagctcctcccgggcatcctggaggaggaagat
gaggagggaggaggtggcggagcctatccgcccggcagcgccgacctggtgatcacagtc
atgcacagagtcctgattggacttgacgtgttcctgggtcagacgatcatcccgctgggt
cgcatgttccgtgaaggcgcgtgcccgagagaccagtggttcaagctgcactcgaaggcg
ggtcgaaaagccaaggagcgtggcgaattgcagctgacagtgctgttcacccgcaacaac
atgacggccagcatgttcgacctcaccgtcaaggacgggcgccgctcggctttcggcaaa
ctcaaggatcgcgtcacgggaagaaaacgccccgacgtggagtcgtcctcggccatcgtg
ccgggccgctacgccgccctctccgtgaccccaggccagccgtcaggtgacgaaagcggg
tgcgccccccgtgggagagatgcggaaataacggaggaaaagaggagtgtcatgaaagat
ttcttcaaagggaagctgagaaagtcatccgacaccaggtcgtgctcttcgctggcctct
gagagcagtgcctcctccatggccagcgacaccaccagccctccgccggctctcggcctg
ctctcggatctccccagctcgcccatctatagcaccgtcacacgagcggacccccgctat
gaagacagagatctgacaaaaacagtgctcaccagtcggcatgcctcgaacatcctgaca
cataagcgagccttcagcgatgaagctggtaaaatcacagcatctgtgcctccgatgaat
cccaccatggagtccgtccaatgccagcagagcatgagtcaatccaagtcgtccgtatgc
ataaatggcagtcacgtgtacgactccgagccatcgatcccaaagagcgccggagccttg
tcatccaagttggttttgttagagaaatgctccccattgtcccgttcccttcagaacctc
accaagcgaaatgaggacaaaggtactttagcggaagagcaacgctggtcctttgacaag
atgaagaaagaggaaaaggatggagaaaaggaagctcggtgggcagagatgggagaacat
cctgagcaggtggcaaacccctccgctgctgattcgtccgacaaagggaggaagttgaga
aagaccttattctctggaggtaggagtgattctgtcccagcaaaaccggatgggagccaa
atcgcctccaactcggaagggaggctcagaggctggttcagttctacagactcccagagc
aagccaaggctggaagtttctcctaagctagaaatcaccacatctatatcccctcctatc
ccccctcgcgcttcctcctccactgactccctccccattgaccagaatcacacacaccca
atcacccctccgtccacccccatctccccctcaaaccccttctttgaggagttgcagagt
tcctctccagctgcacctagctcctcaaccttgtttcacatttctcaacactccgaccgg
ggcacaaccagtcctactcgaggcactagcaaaaaaccctccattaagagggagcgtcca
aggcctgtcgctagacaggtttcgcttcctgagtttctaccgcaaagctccaaacgctca
agtgatcgtgatcgccccatgtcagtgagcatacaggactgggaagactcatttgacgcg
tttgcttcaaacaggctcaactcccccaatggagatgccactcagatgcaactagaaagt
accctagcatcaagccagaggtacagtcctcatgtagcaaatattaatacccaatatcat
atacaagagcgacaaagataccaggaaaaccctccaccgttaccgccaaggagaaatttg
acgaatgagatatactctgatggctggctccacagaggccaagagctggcagtccacaaa
gaagcctaccttctgtcccagactggaatggcctcactgcagtttggaagagagtcagag
tgtaaaagaccaggatcaagtgtgtcaccagacagcgagacctcagcttcctttaatctt
aactctcagcttcatggaatcatcccgtccccgggatcaacgtctgaagagtctctcaaa
aagtatgaacccttggaagacatcactgacttctgggggggcatgttatttgaacaagac
ttgtatggaagggtttgcaagggaaatgtcagacaacccactttacatgttggacctgag
aatgttctcgaccaggagaatattgctgaccttttgaagaagtcctataatcctgtctca
gtgtcagagtttaagactggtaggactccccctttggtagaatctacagaatcttctaca
ataagtcacaccataggcatcaacaataatgtgagtttttcattaaccctcccagatctg
aacatgaatgtgagcaattctgatttcagcttcatagattctgatggatcttctcagtca
gatgcaattgatgaccacaaaggcctcagcattctaagaaggattggtccacagccgtca
aaagattctaaaatcggggtttatcacgagatggctactcatagaaatactaaaaccctt
aaagattccttaagagactcatcgttggaacaaaccagtttagcagataaaatgtgcaaa
gtctccccagtttgccaggacgttttattagagcccaacaaagatagcattgatgaaacc
caggagccactagtagccagtcaatctgatctcgggattgagccaattgacaataagaag
ggaaaggatgatactttacaagagataaaaaatgactatgatgatgatgagaaccttcat
aatgagaaagaattgttcccaagggtggttagcacacgtgttagaccgaaaggaatttca
agcactcatagtctgagcagtatcgatcttggtcaacactcttcaatcgtcagtgaaggt
ccgtcatcttatcaaccaagtaaacctgctccatctcccaatcaggcattggataagtta
ccaatgccctccaccgatgactccttacttcttataggggattctaagactgaaaaccac
tctgagatgtcttttgaagttcttcacgccaaagttgcccctcatttaagaggtttttca
gaatgtgagcagggttgtactctcacctccttaactgatacatctgccaacctccccctt
tcacctgcctgttgtcccctcacatgtccctcaaacacggggctgcaaagcactggaagt
aggtctctgattgtggccccctacacggcttcctccccctccaccctcaacttgagcacc
actgagcagcccccgtttgatgcatgccactcactcttgattgaggagactcggccagct
tgcaaactgccccgccaggagagcagactgcaaccagtgaaacctttaacccaactagag
aagaaggagagccgttcagttctggaaaaactcaaatccaccataagtccaggacgctcc
gcccatcaggtggtggttgagccgccgaaaattcaggagcccacagaggacaggtcagct
ctatatgagcacctgaccaacatggagctcatctccttgctgctgcagcaggacatggac
atgaacaagcagcaggcggcctccgagcgtcagcgggcgcagctggagaaatgcgaggcg
gacctgaagaaggtcaaggcccaggtccgtgacttggaggactacatcgacaacctgctg
ctacgcatcatggagcagacccctacgctacttcaggtccgctccagacacaagtga
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