Syngnathus scovelli (Gulf pipefish): 125988393
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Entry
125988393 CDS
T08785
Symbol
ybx1
Name
(RefSeq) Y-box-binding protein 1 isoform X1
KO
K09276
Y-box-binding protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125988393 (ybx1)
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125988393 (ybx1)
03041 Spliceosome [BR:
sscv03041
]
125988393 (ybx1)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, YB-1/DbpB-like
125988393 (ybx1)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
125988393 (ybx1)
mRNA cycle factors
Common to processing body (P body) and stress granule
125988393 (ybx1)
Spliceosome [BR:
sscv03041
]
Common components
Common spliceosomal components
General mRNP proteins
125988393 (ybx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSD
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-GeneID:
125988393
NCBI-ProteinID:
XP_049609505
LinkDB
All DBs
Position
2:complement(21549169..21555850)
Genome browser
AA seq
305 aa
AA seq
DB search
MSSEGEVQQQQPQQPAVDVESPSSPVVAASAGDKKVIATKVLGTVKWFNVRNGYGFINRN
DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGTAVQGSKY
AADRNRFRRYPRRRGPPRGGEYPENYQSDGEGEPGAGGREGKGSREGGESAPEGDSQQQP
RRPAYPGRRRYPPYFAGEGDENQGGPDQGNKPARQNYYRGFRSSRGPPRPRPVRDGEEDK
ENQGGEAGPNQQPRQRRYRRNVNYRRRPRPPTGGKPGQDTKEAKAEGDASVEKTAAPEAQ
QGGAE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgagggcgaggtacagcaacaacagccgcagcagcctgctgtcgacgtggag
agtccatccagcccggtagtcgcagcttccgcgggggataagaaggtcatcgccacaaaa
gtcctgggtacagtgaaatggttcaacgtcaggaacggatatggtttcatcaataggaac
gacactaaagaggacgtttttgtacaccagacagccatcaaaaagaacaacccgagaaaa
taccttcgcagtgttggtgatggagaaactgtggaatttgatgtagtcgagggagagaag
ggggcagaggcggcgaacgtcaccggcccagggggcaccgcggtccagggaagcaagtac
gccgctgacaggaaccgcttcagacgctacccccgaaggaggggtccaccccgcggcgga
gaatatccagagaactaccagagtgacggagagggcgagccgggagccggaggccgtgaa
ggcaaaggcagccgggaaggtggagagagcgcccctgagggagactcgcagcaacagccg
cgtagacccgcctatcctggcagacggcgctaccctccatactttgccggtgagggcgat
gagaaccaggggggtccagaccagggaaacaaacccgccaggcagaactactacagaggc
ttccggtcaagcaggggtccaccccgtcccagaccggtgcgcgatggtgaggaggacaag
gagaatcagggcggagaagcgggtcccaaccagcagccccgccagcggcgctaccggcgc
aatgtcaactaccgccgccgaccacgcccaccaaccggcggaaaacccggccaggacacc
aaggaggccaaggcggaaggcgatgcctccgtagagaaaacggccgctcccgaggcccag
cagggtggggctgagtag
DBGET
integrated database retrieval system
