Syngnathus scovelli (Gulf pipefish): 125988435
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Entry
125988435 CDS
T08785
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125988435 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125988435 (prpf6)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125988435 (prpf6)
Complex C
U5 SnRNP specific factors
125988435 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_1
TPR_9
ARM_TT21_C
T7SS_EccA1_N
ARM_TT21_5th
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
125988435
NCBI-ProteinID:
XP_049609618
LinkDB
All DBs
Position
2:complement(7385605..7392865)
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AA seq
969 aa
AA seq
DB search
MSASVAKPPSKNAPKTNAAATGAAGATGGAPVVPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQEEDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYSALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLAEVSEEEWLSIPEVGDARNKRQRNPRFEKLTPVPDSFFSKHLQTGENHTSVDPL
KGLGGLNTPYPGSMTPGLMTPGTGDLDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKG
YLTDLNSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI
MKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHMPQSVRIYIRAAELETDVRAKKRV
LRKALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRV
LNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIERAITSLRANGVEINREQWIQDAEE
CDKAGSVATCQAVIRAVIGIGIDEEDRKHTWMEDSDSCVAHGALECARAIYAHALQVFPS
KKSVWLRAAYFEKNHGTRESLETLLQKAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILA
LAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIE
AAQELCTEALKHYEDFPKLWMMRGQIEEQCDNMDKAREAYNQGLKKCPNSVALWLLTSRL
EERVGQLTRARAILEKARLKNPQSPELWLESVRLEFRSGLKNIANTLMAKALQECPNSGI
LWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEP
DLGDAWALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTTEILAQ
VASKIKNTF
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccagtgtggctaaaccgccttctaaaaatgcccctaaaacaaacgcagcagca
accggagcagcgggagcaaccggtggcgcaccggttgttcctctcgcctccccgctaatg
gggaaaaagaagaaacccttcctggggatgcctgccccactaggctacgttcccggtttg
ggcagaggggctactggtttcacgacccgttctgacattggtccagctcgtgatgccaat
gatccagtagatgaccgacatgcacccccaggaaagagaacggttggggaccaaatgaag
aagaaccaggaagaggatgatgaagatctgaatgacactaattatgatgagtttaacgga
tatgcggggagcctgttctccagcggtccttacgagaaggacgatgaagaagcagatgcc
atatattcggctttggataaaaggatggatgaaagacgcaaagaaagaagggagctgaga
gaaaaggaggagattgagaaataccgtatggagcgacccaaaattcagcagcagttttca
gatctcaagaggaaactggcagaggtctcagaggaggagtggcttagcattcctgaagtg
ggagatgccaggaataagcgccagagaaacccacgctttgagaaactcactcctgttccg
gacagctttttttccaagcaccttcagacaggagaaaaccacaccagtgtggatcctttg
aaggggcttggtggtctgaacacgccatacccaggaagcatgacgccagggctgatgacg
ccagggacgggagaccttgacatgaggaaaattggtcaggccaggaacacactcatggat
atgagactcagtcaggtgtctgactcagtcagcggtcagaccgtggtggatccgaaaggt
tacctgaccgacctcaactccatgatccccacacacggaggagacatcagtgacattaaa
aaggctcgtctgctattgaaatccgtgagggagacaaaccctcatcacccgcctgcatgg
attgcctcagccaggctggaagaagtaactgggaaactgcaggtagcccggaacctaatc
atgaaaggcacagagatgtgtcccaagagcgaggacgtgtggctggaggcagccaggctc
cagcctggtgacacggcaaaagctgttgtagctcaagctgtccgccacatgccgcagtcg
gtccgaatctacatcagagctgcggagctagaaacagacgtcagagccaagaaaagagtc
cttaggaaggccctagagaatgtgtccaagtcagtccgtctttggaagacagccgtcgag
ctggaggagccagaagatgccagaattatgctgagccgagcagtggagtgttgcccaaca
agtgtggagctgtggctggctttggctcgccttgagacgtacgagaacgcccgacgcgtc
ttgaacaaggcccgtgagaacatccccaccgaccgccacatttggatcaccgctgcaaag
ttggaggaggccaatggcaacacgcagatggtggaaaagatcattgagagagccatcacc
tcactgcgtgccaacggggtggagatcaacagagagcagtggatacaggacgcagaggag
tgcgacaaagcaggcagcgtggccacctgccaggctgtaatcagagcagtcattgggata
ggcatcgatgaggaagaccgcaagcacacctggatggaggactctgatagttgtgtagcg
catggagcattggagtgtgccagggccatctatgctcatgccctgcaggtgttccccagt
aagaaaagtgtgtggcttcgagcggcctactttgagaagaaccacggaaccagggagtct
ttggagacactcctccagaaagccgtggctcactgtccaaaggcggaggtactctggctt
atgggagccaaatccaagtggctagctgaggacgtgcccgccgccagaagtatcctcgct
ctggcctttcaggctaacccaaacagtgaagagatctggctggctgctgtcaagctggag
tctgaaaataacgagtacgagagagctcgtcggctgctagccaaagctcgcagcagcgcg
cccacagcgagagtttttatgaagtcggtgaagttggagtgggtgttaggcaacattgaa
gctgctcaggagctgtgcaccgaggccctgaaacactatgaggactttcccaaactctgg
atgatgaggggccaaattgaagaacaatgtgacaacatggataaagccagagaggcctac
aaccaagggttgaaaaagtgtcccaactcagtggccctgtggcttctgacatcgcgtctg
gaagaacgagtgggacagctgaccagagccagagccatcctggagaaggcgcgactcaag
aacccacagagtcccgagttgtggttggaatcggtccgattagaattccgttcaggactg
aagaacattgcaaacacactgatggccaaagctctgcaagaatgtcctaattcaggcatc
ctgtgggccgaggccgtctttttggaagccaggccacagaggaagaccaagagtgtggat
gctttgaagaaatgtgaacacgatccacatgtgttgctcgccgtagccaagttgttctgg
agtgagcggaagatcaccaaagccagagagtggttcctccgcacagtcaagatagagcct
gacctgggagatgcttgggctctcttctacaagtttgagctgcagcatggaacagaagag
cagcaggaagaagtgcgcaagcgctgtgagaatgctgagccacgtcacggagagttgtgg
tgcgctgagtctaaacatgttctgaactggcagaagaagacaacagagattcttgcacaa
gttgcaagcaagatcaaaaacacattctga
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